New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 6029891	9 (0.540)	4 (0.280)	4/244	1.3	33.8%	intergenic (‑57/+54)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase
	?	NC_002947	= 6029906	8 (0.560)					intergenic (‑72/+39)	PP_5277/kauB	MFS transporter/4‑guanidinobutyraldehyde dehydrogenase

TCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCAT  >  NC_002947/6029768‑6030052                                                                                                                                           |                                                                                                                                                   tcaaacagtcgggcaacggccgtgacaagtcgctgcacgcactggagaagtacaccgagctgaaggcgacctggatcaagctgtaacccggtaggtccttttcGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCgg                                                                                                                                         >  2:286687‑M1/104‑150 (MQ=255)     acagtcgggcaacggccgtgacaagtcgctgcacgcactggagaagtacaccgagctgaaggcgacctggatcaagctgtaacccggttggtcctttttGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCtt                                                                                                                                     >  2:157585‑M1/100‑150 (MQ=255)           cgcCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgc                                                                                                                               >  1:106028‑M2/1‑129 (MQ=255)                                      cAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCGGCAACGGTCGCGAAGACCTGCAGGAGCGGGCGTGCCCGCGAAAAGGACCTACCGGGGTACAGCGTg                                                                                                    >  1:231087/1‑150 (MQ=255)                                         actggagaagtacaccgagctgaaggcgacctggatcaagctgtaacccggtaggtccttttcGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGc                                                                                                                                           <  2:47803‑M1/45‑1 (MQ=255)                                         actggagaagtacaccgagctgaaggcgacctggatcaagctgtaacccggtaggtccttttcGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGc                                                                                                                                           >  1:47803‑M1/64‑108 (MQ=255)                                                          cccAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTCCAGCTTGATCCAGGTCGCCTTCAGCTc                                                                                >  2:219202/1‑150 (MQ=255)                                                          cccAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTc                                                                                >  2:113176/1‑150 (MQ=255)                                                            cAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCgg                                                                              >  2:318857/1‑150 (MQ=255)                                                                            cccAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAgtgc                                                              <  1:318857/150‑1 (MQ=255)                                                                                  cAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAg                                                        >  1:316462/1‑150 (MQ=255)                                                                                                gCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGc                                          >  2:73778/1‑150 (MQ=255)                                                                                                                  ccGCTCCTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgccgtactggcatcggtgctcagtgtcgggctggcgcttggcgtga                        <  1:155344‑M2/150‑125 (MQ=255)                                                                                                                        cTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttc                                                                      >  2:26002‑M2/1‑20 (MQ=255)                                                                                                                        cTGCAACGGTCGCGAAGACCtgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttc                                                                      <  1:26002‑M2/98‑79 (MQ=255)                                                                                                                            aaCGGTCGCGAAGACCgttgcaggagcgggcttgcccgcaaatgggcccctggaaatattggctgggaggctgtaatgcgttggggtacctacttcgccgtactggcatcggtgctcagtgtcgggctggcgcttggcgtgagcatgccg              <  1:379238‑M2/150‑135 (MQ=255)                                                                                                                                        caCCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCAt  <  1:6439/149‑1 (MQ=255)                                                                                                                                           |                                                                                                                                                   TCACGCCAAGCGCCAGCCCGACACTGAGCACCGATGCCAGTACGGCGAAGTAGGTACCCCAACGCATTACAGCCTCCCAGCCAATATTTCCAGGGGCCCATTTGCGGGCAAGCCCGCTCCTGCAACGGTCGCGAAGACCTGCAGGAGCGGGCTTGCCCGCGAAAAGGACCTACCGGGTTACAGCTTGATCCAGGTCGCCTTCAGCTCGGTGTACTTCTCCAGTGCGTGCAGCGACTTGTCACGGCCGTTGCCCGACTGTTTGAAGCCACCGAACGGCGCGGTCAT  >  NC_002947/6029768‑6030052

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.