New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	5758343 =	18 (0.820)	4 (0.240)	4/200	0.9	22.5%	intergenic (+42/‑646)	glnG/PP_5050	two‑component system DNA‑binding response regulator GlnL/GlnG/transposase
	?	NC_002947	5760143 =	14 (0.840)					intergenic (+189/+329)	PP_5050/PP_5051	transposase/hypothetical protein

CTGGGTTGGGGGCGCAATACCCTGACGCGCAAGATCAAGGAGCTGGGGATGAATGTGGCCGGGGGGGATGATGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCAC  >  NC_002947/5758209‑5758472                                                                                                                                       |                                                                                                                                  ttttgcaaaagccgtgaatactgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctggggccgctttgcgccc                                                                                                                                  >  2:287940‑M1/135‑136 (MQ=255)   tttgcaaaagccgtgaatactgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctgggccgctttgcgcCCCa                                                                                                                                >  2:53475‑M1/133‑136 (MQ=255)   ttgcaaatgccgtgaattctgggctttgcgggtgttttggccggattttgaggggatttgtgccttcctgaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggcgggggccgctttgcgcCCCa                                                                                                                                >  2:353475‑M1/133‑136 (MQ=255)   gggTTGGGGGCGCAATACCCTGACGCGCAAGATCAAGGAGCTGGGGATGAATGTGGCCGGGGGGGATGATGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCa                                                                                                                                >  1:359006/1‑136 (MQ=255)       aaaagccgtgaatactgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctggggccgctttgcgcCCCATcgc                                                                                                                            <  1:436315‑M1/8‑1 (MQ=255)                     ctgggctttgcgggtgatttggccggattttgaggggatttgtgccttcctgtggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctggggccgctttgcgcCCCATCGCGACACAAGGCCGCt                                                                                                              >  1:529539‑M1/115‑136 (MQ=255)                     ctgggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctggggccgctttgcgcCCCATCGCGACACAAGGCCGCt                                                                                                              >  1:510118‑M1/115‑136 (MQ=255)                      cTGACGCCCAAGATCAAGGAGGGGGGGTTTTATGTGGCCGGGGGGTATGTTGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTc                                                                                                             <  1:361881/136‑1 (MQ=38)                       gggctttgcgggtgatttggccggattttgaggggatttgtgccttccagaggtgcagcgggcacaggaacggtgcattcagacgactgaaatggctgggaccgctttgcagCCCATCGCGACACAAGGCCGCTcc                                                                                                            >  1:158714‑M1/113‑136 (MQ=255)                              cAAGATCAAGGAGCTGGGGATGAATGTGGCCGGGGGGGATGATGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGa                                                                                                     <  1:133753/136‑1 (MQ=255)                                                     agggggCCGGGGGGCTTGATGCGGACGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGAt                                                                              <  2:532165/132‑1 (MQ=38)                                                                       ttgaGCAAGGGGATGACCACTGAGCTGTTATTTTGCTTTTTTTTTGGGGGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATcgc                                                            <  2:360986/135‑1 (MQ=25)                                                                       cgaggtgcagcgggcacaggaacggtgcattcagacgactgaattggctggggccgctttgcgcCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATcgc                                                            >  1:45396‑M1/65‑136 (MQ=255)                                                                       atgaGGAAGGTGATGACCACTGAGCTCTTAATTAGCTTTTTAGATTGCTGGGGCTGCTTTCCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATcgc                                                            <  2:332377/136‑1 (MQ=255)                                                                        tgaGTAAGGTTATCACCACTGTGCTCTGAATTAGGTTTTTAGATTGGTGGGGGTGCTTTGCTGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATcgcg                                                           <  2:369975/136‑1 (MQ=38)                                                                                  ggacacaggaacggggcattcagacgactcaaatggctggggccgctttgcgcCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAg                                                 >  1:37140‑M1/54‑136 (MQ=255)                                                                                   atgaCCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATCCGGTGGAAACACATCGCGGACGTCGTAgg                                                >  2:493184/1‑136 (MQ=255)                                                                                       ccACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCg                                            >  1:391033/1‑136 (MQ=255)                                                                                        cACTGAGCTCTTAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCgg                                           <  1:299975/136‑1 (MQ=255)                                                                                         aCTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATAGCGGTCGTCGGAGGAGCggg                                          >  1:300075/1‑136 (MQ=255)                                                                                             aGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCa                                      >  2:401508/1‑136 (MQ=255)                                                                                              gCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCAc                                     >  1:38333/1‑136 (MQ=255)                                                                                                tctTAATTTGTTTTTTTTTTTGGTGGGGCGGCTTGCCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCAccc                                   <  1:493184/136‑1 (MQ=37)                                                                                                     aTTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACCTCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGaa                              >  1:556523/1‑136 (MQ=255)                                                                                                                 gATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATcgc                                                            <  1:225576/94‑1 (MQ=255)                                                                                                                 gATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATcgc                                                            >  2:225576/1‑94 (MQ=255)                                                                                                                     gCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCctgctg              <  1:182600/136‑1 (MQ=255)                                                                                                                             cgctttgcgcCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCActct      <  1:241510‑M1/126‑1 (MQ=255)                                                                                                                                 ttccccCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCAc  >  1:81357‑M1/7‑136 (MQ=255)                                                                                                                                       |                                                                                                                                  CTGGGTTGGGGGCGCAATACCCTGACGCGCAAGATCAAGGAGCTGGGGATGAATGTGGCCGGGGGGGATGATGAGGAAGGTGATGACCACTGAGCTCTGAATTAGCTTTTTAGATTGCTGGGGCTGCTTTGCAGCCCATCGCGACACAAGGCCGCTCCCACAGGATCACCTCTGCCCCCAAGGCTGATGCGGTGGACACACATCGCGGTCGTCGTAGGAGCGGGTTCACCCGCGAAGAGGCCGGGCCTGCTGGCCAATCTCCAC  >  NC_002947/5758209‑5758472

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.