| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 652786 | 31 (1.400) | 20 (1.240) | 8/194 | 0.4 | 63.8% | coding (1960/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | 4810176 = | 0 (0.000) | intergenic (‑318/‑237) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
CGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAA > NC_002947/4810106‑4810309 | ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctccCAGGCGCTGAAAATCCTCCCGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc > 2:354932‑M2/71‑136 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaca > 2:370781‑M2/71‑72 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaca < 1:370781‑M2/2‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 1:116554‑M2/71‑74 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 2:446833‑M2/4‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 1:207728‑M2/71‑74 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 1:29831‑M2/4‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 1:446833‑M2/71‑74 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 2:116554‑M2/4‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg < 2:207728‑M2/4‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAgg > 2:29831‑M2/71‑74 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGgc > 2:485144‑M2/71‑75 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGgc < 1:485144‑M2/5‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCt < 1:313697‑M2/30‑1 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCt > 2:313697‑M2/71‑100 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgc > 2:50020‑M2/71‑136 (MQ=255)ataattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCACGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTACAACGCCGTCCACACAAAATTCCaactc > 2:396158‑M2/71‑134 (MQ=255) taattggcccgaaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgaacacaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgcc > 1:125777‑M2/70‑136 (MQ=255) aaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGc > 2:23704‑M2/59‑80 (MQ=255) aaacaaacgtaggagcgggtttacccgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGc < 1:23704‑M2/22‑1 (MQ=255) cgcgaagcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGaaa > 1:150909‑M2/34‑136 (MQ=255) gcgccgcgcgggcggcgctcgatctcaCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCcaa > 1:108173‑M2/28‑136 (MQ=255) cctccCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAAATCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCa < 1:368063‑M2/131‑1 (MQ=255) caCAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGaa < 1:525800‑M2/134‑1 (MQ=255) | CGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAA > NC_002947/4810106‑4810309 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |