BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_002947	4,717,084	T→C	F116S (TTC→TCC)	PP_4173 →	two‑component system sensor histidine kinase/response regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_002947	4,717,084	0	T	C	100.0%	775.4 / NA	215	F116S (TTC→TCC)	PP_4173	two‑component system sensor histidine kinase/response regulator
Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (111/104); total (111/104)

Only 100 of 216 total aligned reads displayed.

ACAACGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCA  >  NC_002947/4716937‑4717228

ccaacGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCACCAGGTCGAGGTGTccc                                                                                                                                                >  2:5400751/2‑150 (MQ=255)

  aacGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAg                                                                                                                                              <  1:3607610/150‑1 (MQ=255)

  aacGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAg                                                                                                                                              >  1:3825836/1‑150 (MQ=255)

  aacGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAg                                                                                                                                              >  1:2650683/1‑150 (MQ=255)

  aacGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAg                                                                                                                                              >  2:647910/1‑150 (MQ=255)

  aacGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAg                                                                                                                                              >  2:3964629/1‑150 (MQ=255)

  aacGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAg                                                                                                                                              >  2:1598453/1‑150 (MQ=255)

     gAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGgcg                                                                                                                                           <  1:2413700/150‑1 (MQ=255)

            ttGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTc                                                                                                                                    <  2:17227/150‑1 (MQ=255)

            ttGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTc                                                                                                                                    >  2:3256474/1‑150 (MQ=255)

            ttGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTc                                                                                                                                    <  1:1407157/150‑1 (MQ=255)

            ttGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTc                                                                                                                                    <  1:5355776/150‑1 (MQ=255)

                  ggCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTgc                                                                                                                              <  1:4335172/150‑1 (MQ=255)

                  ggCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTgc                                                                                                                              >  1:3689795/1‑150 (MQ=255)

                   gCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTgca                                                                                                                             <  1:5266119/150‑1 (MQ=255)

                   gCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTgca                                                                                                                             <  2:3927708/150‑1 (MQ=255)

                   gCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTgca                                                                                                                             <  2:3480751/150‑1 (MQ=255)

                   gCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACAGCGCGCACCAGGTCGAGGTGTCCCTGGCGCCCATGCGCCTgca                                                                                                                             >  2:5421043/1‑150 (MQ=255)

                    cTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTggga                                                                                                                            <  1:4884887/150‑4 (MQ=255)

                    cTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTgcag                                                                                                                            >  2:1112191/1‑150 (MQ=255)

                     tGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTgcagc                                                                                                                           >  2:4347647/1‑150 (MQ=255)

                       aTGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCaa                                                                                                                         >  2:418178/1‑150 (MQ=255)

                           gTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATcc                                                                                                                     <  2:5256199/150‑1 (MQ=255)

                             gCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGc                                                                                                                   <  1:4786390/150‑1 (MQ=255)

                               cACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCt                                                                                                                 <  1:4111420/150‑1 (MQ=255)

                                aCCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTg                                                                                                                <  1:3356150/150‑1 (MQ=255)

                                  ccTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGa                                                                                                              >  2:4929961/1‑150 (MQ=255)

                                  ccTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGa                                                                                                              >  2:4929886/1‑150 (MQ=255)

                                  ccTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGa                                                                                                              <  1:4022021/150‑1 (MQ=255)

                                  ccTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGa                                                                                                              <  2:487050/150‑1 (MQ=255)

                                  ccTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGa                                                                                                              >  1:2011957/1‑150 (MQ=255)

                                     cAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACaa                                                                                                           >  2:1474047/1‑150 (MQ=255)

                                      aGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAAc                                                                                                          <  2:1829986/150‑1 (MQ=255)

                                      aGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAAc                                                                                                          <  1:129691/150‑1 (MQ=255)

                                        cATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGGGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGGCGAGGTGGCCCCGGCGCCCAGTCGCCTGCAGCAAATCCGCCGGGCCACCgc                                                                                                        >  2:3561813/1‑149 (MQ=255)

                                           cccGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACtt                                                                                                     >  2:2373896/1‑150 (MQ=255)

                                            ccGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTc                                                                                                    >  2:5339450/1‑150 (MQ=255)

                                            ccGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTc                                                                                                    <  1:2268724/150‑1 (MQ=255)

                                            ccGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTAGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTc                                                                                                    <  1:2148285/150‑1 (MQ=255)

                                            ccGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACAGCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCATCAAATCCGCCTGGACAACGACTTc                                                                                                    <  1:3055977/150‑1 (MQ=255)

                                             cGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTcc                                                                                                   <  2:1941185/150‑1 (MQ=255)

                                              gCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCt                                                                                                  <  2:3370994/150‑1 (MQ=255)

                                              gCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCt                                                                                                  >  2:3694176/1‑150 (MQ=255)

                                                  gTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCaa                                                                                              >  2:1032743/1‑150 (MQ=255)

                                                   tGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAAc                                                                                             <  1:1044766/150‑1 (MQ=255)

                                                   tGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAAc                                                                                             <  1:448163/150‑1 (MQ=255)

                                                    gcgcTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACa                                                                                            <  2:1902430/150‑1 (MQ=255)

                                                      gcTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAgg                                                                                          <  2:3772867/150‑1 (MQ=255)

                                                       tagacTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGTAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAggg                                                                                         <  1:4701252/146‑1 (MQ=255)

                                                           cTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCaaa                                                                                     <  1:4765885/150‑1 (MQ=255)

                                                           cTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCaaa                                                                                     <  1:2847939/150‑1 (MQ=255)

                                                           cTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCaaa                                                                                     <  1:1223853/150‑1 (MQ=255)

                                                            tGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAg                                                                                    <  1:1716252/150‑1 (MQ=255)

                                                            tGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAg                                                                                    >  2:2910951/1‑150 (MQ=255)

                                                            tGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAg                                                                                    >  2:2450602/1‑150 (MQ=255)

                                                             ggAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGc                                                                                   >  2:589475/1‑150 (MQ=255)

                                                                  tGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGccacca                                                                              <  1:2911222/150‑1 (MQ=255)

                                                                  tGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGccacca                                                                              >  1:4936533/1‑150 (MQ=255)

                                                                    cAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGc                                                                            >  2:3191944/1‑150 (MQ=255)

                                                                       gACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCg                                                                         >  2:4109096/1‑150 (MQ=255)

                                                                         cAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGc                                                                       >  2:1860097/1‑150 (MQ=255)

                                                                          aGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGcc                                                                      >  2:1358802/1‑150 (MQ=255)

                                                                          aGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGcc                                                                      >  2:1358981/1‑150 (MQ=255)

                                                                            ccGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCAt                                                                    >  2:2233319/1‑150 (MQ=255)

                                                                             cGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATc                                                                   <  2:4480063/150‑1 (MQ=255)

                                                                             cGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATc                                                                   >  1:4156831/1‑150 (MQ=255)

                                                                                 aCCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTg                                                               <  2:2675744/150‑1 (MQ=255)

                                                                                  ccACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTga                                                              <  2:3006362/150‑1 (MQ=255)

                                                                                      aTCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTgacgac                                                          >  2:2191512/1‑150 (MQ=255)

                                                                                        ccTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTa                                                        <  1:5061025/150‑1 (MQ=255)

                                                                                                aCGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGcc                                                <  2:1564237/150‑1 (MQ=255)

                                                                                                  gTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCCACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCcgc                                              <  2:4480294/150‑1 (MQ=255)

                                                                                                    cGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGt                                            >  1:2129451/1‑150 (MQ=255)

                                                                                                    cGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGt                                            >  2:1799569/1‑150 (MQ=255)

                                                                                                        cAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGAtc                                        <  2:3235841/150‑1 (MQ=255)

                                                                                                         aGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCAGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGAtcg                                       <  1:1770426/150‑1 (MQ=255)

                                                                                                          gTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGAtcgt                                      <  1:2191512/150‑1 (MQ=255)

                                                                                                           tCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGAtcgtc                                     >  1:4397852/1‑150 (MQ=255)

                                                                                                           tCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGAtcgtc                                     >  2:3988047/1‑150 (MQ=255)

                                                                                                             cgacgaAAGTGCCAACCGCGCGCAACGGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCgg                                   >  2:5289622/1‑150 (MQ=255)

                                                                                                              gacgaAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGc                                  >  2:5032113/1‑150 (MQ=255)

                                                                                                              gacgaAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGAAACAGGGCAAAGCCACCATCACGGCCATCGGTGACGACTACCTCCGCCGCGTGATCGTCgga                                  >  1:3100807/1‑149 (MQ=255)

                                                                                                               acgaAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCACATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCa                                 <  2:2768805/150‑1 (MQ=255)

                                                                                                                 gaAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATg                               >  1:5410193/1‑150 (MQ=255)

                                                                                                                  aaaGTGCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGt                              <  2:1229230/150‑1 (MQ=255)

                                                                                                                       gCCAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCAtattccga                         <  2:3901861/150‑8 (MQ=255)

                                                                                                                        ccAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATg                        >  1:328985/1‑150 (MQ=255)

                                                                                                                        ccAACCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATg                        >  1:4442920/1‑150 (MQ=255)

                                                                                                                          aaCCGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGAc                      >  2:1401695/1‑150 (MQ=255)

                                                                                                                            ccGCGCGCAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGc                    >  2:470111/1‑150 (MQ=255)

                                                                                                                                 cgcAACAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTtca               <  1:1112191/150‑1 (MQ=255)

                                                                                                                                    aaCAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTtcagtc            >  2:3598876/1‑150 (MQ=255)

                                                                                                                                    aaCAGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTtcagtc            >  1:4566278/1‑150 (MQ=255)

                                                                                                                                       aGGTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAgc         >  1:855122/1‑150 (MQ=255)

                                                                                                                                         gTCGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAgcgc       >  1:2620692/1‑150 (MQ=255)

                                                                                                                                           cGAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCca     <  2:3497184/150‑1 (MQ=255)

                                                                                                                                            gAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCcag    >  2:1597841/1‑150 (MQ=255)

                                                                                                                                            gAGGTGTCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCcag    >  2:811191/1‑150 (MQ=255)

                                                                                                                                             tggTGTCCCAGGAGCCCTTTCGCCTGCAGCAACTGCGCCTGGACAACGACTTCCTGCAACCGGGCAAAGCAACCAGGCCGGGCATCGGTGACGACTACCTGGTCCGCGTGATCGTCGTCATGTCCGATGACGCCTTCAGTCAGCGCcagc   <  2:3100807/149‑1 (MQ=255)

                                                                                                                                               gtgtCCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTc                                                                                                    >  1:621383/1‑51 (MQ=255)

ACAACGAAGTGCTTGAAGGGCTGATGCGTGCCACCCTCAGCATCCCGCACGTGCGCTTTCTGGAAGTGCAGGACAGCCGCAACCACATCCTGGTGTACGTCGAGCAGTCCGACGAAAGTGCCAACCGCGCGCAACAGGTCGAGGTGTTCCAGGCGCCCATTCGCCTGCAGCAAATCCGCCTGGACAACGACTTCCTGCAACAGGGCAAAGCCACCAGCCCGGCCATCGGTGACGACTACCTGGGCCGCGTGATCGTCGGCATGTCCGATGACGCCTTCAGTCAGCGCCAGCA  >  NC_002947/4716937‑4717228

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`