New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 652786	35 (0.900)	6 (0.210)	4/194	1.7	31.8%	coding (1960/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	4810176 =	0 (0.000)					intergenic (‑318/‑237)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2

CAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAAT  >  NC_002947/652655‑652921                                                                                                                                    |                                                                                                                                        cAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGAcc                                                                                                                                     <  1:740366/136‑1 (MQ=255)                ggACTCGCGAGGTGTAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCTAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCAcc                                                                                                                      <  2:729824/136‑1 (MQ=255)                ggACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCAcc                                                                                                                      <  1:446238/136‑1 (MQ=255)                     cgcgAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGcccc                                                                                                                 >  1:761078/1‑135 (MQ=255)                     cgcgAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCg                                                                                                                 <  1:543466/136‑1 (MQ=255)                       cgAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGATTAATTGGCCCGAAACAACCGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGt                                                                                                               <  2:35882/136‑1 (MQ=255)                                 ggTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCGGAAACAAACGTAGGAGCGGGTTTACCAGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCAcc                                                                                                     <  1:791858/135‑1 (MQ=255)                                     cccGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGccc                                                                                                 <  2:810127/136‑1 (MQ=255)                                           aTGATAACGGATGCGCAGTAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTc                                                                                           <  1:628136/136‑1 (MQ=255)                                                 ccGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCagcagc                                                                                     <  2:462760/135‑1 (MQ=255)                                                      tGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGGCCAGGCTCAGCAGCTGTTc                                                                                <  2:651426/136‑1 (MQ=255)                                                      tGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTc                                                                                <  2:747827/136‑1 (MQ=255)                                                             taataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGt                                                                         <  2:473230/135‑1 (MQ=255)                                                             gAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACACCCAGAACCCTCGCACCCCCCCGTTAAGCTCACCCCCCCCGCGCAGCCGCTGTTAACCCAGt                                                                         >  2:169889/1‑136 (MQ=18)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                                     <  1:879793‑M1/74‑5 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                                     <  1:646131‑M1/74‑5 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                                     >  2:523393‑M1/1‑70 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                                     <  2:536971‑M1/74‑5 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                                     >  1:536971‑M1/1‑70 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                                     <  1:523393‑M1/74‑5 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                                     >  2:646131‑M1/1‑70 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                                     <  1:211106‑M1/74‑5 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                                     >  2:879793‑M1/1‑70 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgcccactcaaaattccaacgc                                                                       >  2:77102‑M1/1‑70 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                                     >  2:577974‑M1/1‑70 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                                     >  2:203810‑M1/1‑70 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                                     >  2:8367‑M1/1‑70 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                                     <  1:203810‑M1/74‑5 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                                     <  1:8367‑M1/74‑5 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcagg                                                                                                                                     <  1:577974‑M1/74‑5 (MQ=255)                                                               ataatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCCGCGCTCGATCTCCcagg                                                                                                                                     >  2:211106‑M1/1‑70 (MQ=255)                                                                 aatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                                     >  1:255152‑M1/1‑68 (MQ=255)                                                                 aatTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCCcagg                                                                                                                                     <  2:255152‑M1/72‑5 (MQ=255)                                                                  tttGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACg                                                                    <  2:566558/135‑1 (MQ=255)                                                                  atTGGCCCTAAACACACTTAGGGCCGGTTTCCCCCCCTAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACg                                                                    <  1:128051/136‑1 (MQ=37)                                                                  atTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACg                                                                    <  1:952529/136‑1 (MQ=255)                                                                      ggccgaAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgccgccccc                                                                >  1:677902‑M1/3‑63 (MQ=255)                                                                         cGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgccgccccctca                                                             >  2:653599‑M1/1‑60 (MQ=255)                                                                         cGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCg                                                             <  2:616260/136‑1 (MQ=255)                                                                          gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCAcc                                                                                                                      >  1:670245/1‑78 (MQ=255)                                                                          gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCAcc                                                                                                                      <  2:670245/78‑1 (MQ=255)                                                                          gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTAAGCTAACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGc                                                            >  2:778646/1‑136 (MQ=255)                                                                           aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaactctcccggc                                                                                                                   <  2:497943‑M1/80‑23 (MQ=255)                                                                           aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaactctcccggc                                                                                                                   >  1:497943‑M1/1‑58 (MQ=255)                                                                             acaaacGTAGGAGCGGGATTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCaa                                                         <  2:773740/136‑1 (MQ=255)                                                                               aaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacccctcaaaattccaacgccgtccactcaaaattccaacgccgccccctcaaaatta                                                       >  1:541975‑M1/1‑54 (MQ=255)                                                                               aaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgccgccccctcaaaattc                                                       >  1:376427‑M1/1‑54 (MQ=255)                                                                                      ggAGGGGGTTTACCCGCGAAGCGCGGCGCGGGCGGCGCTCGATCTCAGACCCTGAACTCTCGCACCGCCCGGTTCAGCTCTCCGCCCAGGCTCAGCTGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCTCTGCa                                                <  2:371849/136‑1 (MQ=38)                                                                                      ggAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCa                                                <  2:624012/136‑1 (MQ=255)                                                                                      ggAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCa                                                <  2:776478/136‑1 (MQ=255)                                                                                      ggAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCa                                                <  2:467669/136‑1 (MQ=255)                                                                                         gCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgccgccccctcaaaattccaacgccgcc                                             >  2:511118‑M1/1‑44 (MQ=255)                                                                                         gCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCCCCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGt                                             >  1:244819/1‑136 (MQ=255)                                                                                            ggTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGt                                          <  2:715741/136‑1 (MQ=255)                                                                                                tACCCGCGAAGCGCCGCGCGGGCGGCGCTCGCTCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTAACCGCCCAGGCTCAGCAGCTGTTGACCCGGGTTACGCCCCACGCCAATGAGCTGCAGGTTGTCtta                                      >  1:662391/1‑135 (MQ=38)                                                                                                tACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTc                                      >  1:218775/1‑136 (MQ=255)                                                                                                 aCCCGGGAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgc                                     <  1:623797‑M1/136‑101 (MQ=255)                                                                                                       gAAGCGCCGCGCGGGCGGCGCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgccgccccctcaaaattccaacgccgcctcccctcgaaaatc                               <  1:511118‑M1/136‑107 (MQ=255)                                                                                                                ggcgggcggcGCTGGATCTCAcaggcgctgaaaatcctccggcaaacacctaaaatttccaacgccgtccactcaaaattccaacgccgccccctcaaaattccaacgccgcctcccctcgaaaatccaacaacaa                      <  2:805193‑M1/135‑116 (MQ=255)                                                                                                                cgcgGGCGGAGCTCGATCTCActggcgctgaaaatcctccggcaaacacctcaaatttccaacgccttccactcaaaattccaacgccgccccctcaaaattccaacgccgcctcccctcgaaaatccaacaacaa                      <  2:809588‑M1/136‑116 (MQ=255)                                                                                                                   gggcggCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCcgc                   >  2:859330/1‑136 (MQ=255)                                                                                                                     gcggcgCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCcgctc                 <  2:521337/136‑1 (MQ=255)                                                                                                                      cggcgCTCGATCTCAcaggcgctgaaaatcctccggcaaacacctcaaaattccaacgccgtccactcaaaattccaacgccgccccctcaaaattccaacgccgcctcccctcgaaaatccaacaacaaagaccc                <  1:653599‑M1/136‑122 (MQ=255)                                                                                                                        gcgcTCGATCTCAGACCCTGATCGCTCGCTCCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGATGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCGAGTTCGTGTATCcgctcgct              <  1:3565/136‑1 (MQ=255)                                                                                                                                 ctcAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACg     <  2:761078/136‑1 (MQ=255)                                                                                                                                 ctcAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACg     <  1:616673/136‑1 (MQ=255)                                                                                                                                    acagtcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcccattgccctatacacac  <  1:931671‑M1/136‑136 (MQ=255)                                                                                                                                    acaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaaagcgcgaattccgcccattgccctatacacac  <  2:37228‑M1/136‑136 (MQ=255)                                                                                                                                    |                                                                                                                                        CAGGCGGCGCATGGCGGACTCGCGAGGTGGAACGTGCCCGGCATGATAACGGATGCGCAGGAATAATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCAGACCCTGAACGCTCGCACCGCCCGGTTCAGCTCACCGCCCAGGCTCAGCAGCTGTTCACCCTGTTTACGCCCCTCGCCAATGCGCTGCAGGTTGTCTTCACCCAGTTCGTGAATCCGCTCGCTGTGGTCACGAAT  >  NC_002947/652655‑652921

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.