| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_002947 | = 652786 | 35 (0.900) | 23 (0.590) | 7/264 | 1.5 | 56.8% | coding (1960/1962 nt) | ctpL | methyl‑accepting chemotaxis protein CtpL |
| ? | NC_002947 | = 4810125 | 0 (0.000) | intergenic (‑267/‑288) | PP_4234/dsbD‑II | bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
GTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCG > NC_002947/4809991‑4810195 | gtgtgtATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGt < 2:37228‑M2/136‑2 (MQ=255)gtgtgtATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGACTGt < 1:931671‑M2/136‑2 (MQ=255) gCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCG > 1:974088‑M1/1‑136 (MQ=255) gCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCG > 1:880815‑M1/1‑136 (MQ=255) gCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTCTTCGCCGGGAGAGTTACAGCGCCAGGGAGATCGAGCGCCGCCCc > 2:449811‑M1/1‑135 (MQ=255) ggAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCcct > 1:380336‑M1/1‑133 (MQ=255) ttGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcg < 1:880349‑M1/136‑13 (MQ=255) gCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGtgagatcgagcgccgcccgcgcggcgcttcccgggt < 1:623797‑M2/136‑37 (MQ=255) gCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggt > 1:112026‑M1/1‑121 (MQ=255) gggTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaa < 2:841723‑M1/136‑18 (MQ=255) ggTGTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCTGCGCCTGGTAGTTGTTCGCGGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtt < 1:359025‑M1/136‑37 (MQ=255) ggtttccGCGCGTGGGTGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCGGGGAGTGTTTCAGGGCCTGGGATTTCGAGCGCCGCCCGCGgggcgcttcgcgggtaaacccgctcctacgtttgttt < 2:597370‑M1/134‑38 (MQ=255) gTTTTCTGGGCGTGGGAGGTGTTCGGCGGGGGTTTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgttagttt < 2:588309‑M1/136‑38 (MQ=255) gtgGTAGGTGTTCGCCGGGGTATTTTCAGCGCCTGGTAGGTGTTGGCCGGTAGTGTTTCAGCGCCTGGTAGAGCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccc < 2:47190‑M1/135‑49 (MQ=255) gtgGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGGGCCTGGGAGATCGAGCGCCGCGCGGGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccc < 2:195944‑M1/135‑49 (MQ=255) cggggagGTGTTCGCCGGGGGATTTTCTGCGCCGGGGAGGTGTTCGCCGGGAGTGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccc < 2:203160‑M1/134‑49 (MQ=255) cTGGGTGGTGTTCGGCGGGTGATTTTCATCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgtttcggccagtccc < 1:504925‑M1/136‑49 (MQ=255) ttCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgttt > 1:560479‑M1/1‑46 (MQ=255) ttCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGcggcgcttcgcgggtaaacccgctcctacgtttgttt < 2:560479‑M1/83‑38 (MQ=255) gCCGGGAGAGTTTCAGCGCCTGtgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgttt < 2:497943‑M2/80‑59 (MQ=255) gCCGGGAGAGTTTCAGCGCCTGtgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgttt > 1:497943‑M2/1‑22 (MQ=255) ccTGtgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 2:577974‑M2/1‑4 (MQ=255) ccTGtgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat < 1:203810‑M2/74‑71 (MQ=255) ccTGtgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 2:8367‑M2/1‑4 (MQ=255) ccTGtgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 2:203810‑M2/1‑4 (MQ=255) ccTGtgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat < 1:8367‑M2/74‑71 (MQ=255) ccTGtgagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat < 1:577974‑M2/74‑71 (MQ=255) ccTGggagatcgagcgcggcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 2:211106‑M2/1‑4 (MQ=255) ccTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat < 1:879793‑M2/74‑71 (MQ=255) ccTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 2:523393‑M2/1‑4 (MQ=255) ccTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat < 2:536971‑M2/74‑71 (MQ=255) ccTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat < 1:646131‑M2/74‑71 (MQ=255) ccTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 1:536971‑M2/1‑4 (MQ=255) ccTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat < 1:523393‑M2/74‑71 (MQ=255) ccTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 2:646131‑M2/1‑4 (MQ=255) ccTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat < 1:211106‑M2/74‑71 (MQ=255) ccTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaattat > 2:879793‑M2/1‑4 (MQ=255) ccTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaatt < 2:255152‑M2/72‑69 (MQ=255) ccTGggagatcgagcgccgcccgcgcggcgcttcgcgggtaaacccgctcctacgtttgtttcgggccaatt > 1:255152‑M2/1‑4 (MQ=255) | GTGTGTATAGGGCAATGGGCGGAATTCGCGCTTTGGCGGGTAGGTGTTTGGCGGGAGGTTTTCAGCGCCTGGGAGGTGTTCGCCGGGGGATTTTCAGCGCCTGGGAGGTGTTCGCCGGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCG > NC_002947/4809991‑4810195 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |