New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 4810146	0 (0.000)	12 (0.360)	7/224	1.3	38.1%	intergenic (‑288/‑267)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
	?	NC_002947	= 5990927	39 (1.190)					intergenic (+243/‑303)	kefB‑III/PP_mr64	glutathione‑regulated potassium/H+ antiporter/C4 ncRNA

GTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCG  >  NC_002947/5990796‑5991051                                                                                                                                    |                                                                                                                             gtgGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcc                                                                                                                          <  1:670782‑M2/136‑5 (MQ=255)     gACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcg                                                                                                                      <  1:191472‑M2/136‑9 (MQ=255)     gACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcg                                                                                                                      <  1:337024‑M2/136‑9 (MQ=255)      aCGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGACGCGCCGcgcgggcgg                                                                                                                     <  1:331361‑M2/136‑10 (MQ=255)      aCGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcgg                                                                                                                     <  1:780339‑M2/136‑10 (MQ=255)      aCGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggccg                                                                                                                     <  1:173231‑M2/136‑10 (MQ=255)               cgAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgcccaatc                                                                                                            <  2:337440‑M2/136‑19 (MQ=255)               cgAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgcccaatc                                                                                                            <  1:756319‑M2/136‑19 (MQ=255)                   cccccTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCCCAATCTCac                                                                                                        <  1:337440/136‑2 (MQ=255)                                  cTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAAca                                                                                         >  2:742510/1‑135 (MQ=255)                                   tCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGCTCTCATGGGCGACCAAAAACTa                                                                                        >  2:565873/1‑136 (MQ=255)                                   tCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATctcccaggcgctgaaaatcctc                                                                                       <  2:684192‑M2/136‑23 (MQ=255)                                   tCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGACTGGTGCAGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCGCGATctcacaggcgctgaaaatcctc                                                                                       <  1:71899‑M2/136‑23 (MQ=255)                                               cgtACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCCCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATAGCCAGGCAcc                                                                            >  2:197423/1‑136 (MQ=255)                                                              gTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGc                                                             <  2:670782/136‑1 (MQ=255)                                                                  cgcgcgaCTGGTGCAGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATctcacaggcgctgaaaat                                                                                           >  1:484939‑M2/1‑83 (MQ=255)                                                                  cgcgcgaCTGGTGCAGGAGGGACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATctcacaggcgctgaaaat                                                                                           <  2:484939‑M2/101‑19 (MQ=255)                                                                                    gggATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgc                                       >  2:34689/1‑136 (MQ=255)                                                                                    gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgctctaccaggcgctgaaacactaccggccaacacctaccaggcgctgaaaataccccggcgaacacctaccac                                      <  2:47190‑M2/136‑89 (MQ=255)                                                                                    gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgatgaaaatcacccgccgaacaccacccag                                      <  1:504925‑M2/136‑89 (MQ=255)                                                                                    gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaacactcccggcgaacacctccccggcgcagaaaatcccccggcgaacacctccccg                                      <  2:203160‑M2/136‑89 (MQ=255)                                                                                    gggACTGGCC‑GAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGcccgcgcggcgctcgatctcccaggccctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccac                                      <  2:195944‑M2/136‑89 (MQ=255)                                                                                    ataactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgc                                       >  1:853420/6‑136 (MQ=255)                                                                                      aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCCTCCTGCAATTTCCTGCCGATCACCTcgccg                                     >  2:97305/4‑136 (MQ=255)                                                                                      aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgccg                                     >  1:349793/4‑136 (MQ=255)                                                                                      aactGGCCCGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgccg                                     >  2:578264/4‑136 (MQ=255)                                                                                          ggCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCAt                                 >  2:369352/1‑136 (MQ=255)                                                                                          ggCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCGCGCTCTCATGGGCGCCCCAAAACTATCGCCAGGCACCTGGCAGCCATCCTGCAATTTCCTGCCGATCACCTCGCCGCCaa                                 >  1:345409/1‑135 (MQ=37)                                                                                              cgAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACAATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGAAGATCACCACGCCGCCATGAcg                             >  1:656170/2‑136 (MQ=255)                                                                                              cgAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATATCATTGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcg                             >  2:685093/2‑136 (MQ=255)                                                                                               gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAGAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgc                            >  1:400758/1‑136 (MQ=255)                                                                                               gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgc                            >  2:210766/1‑136 (MQ=255)                                                                                               gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgc                            >  1:165682/1‑136 (MQ=255)                                                                                               gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgc                            >  2:9580/1‑136 (MQ=255)                                                                                               gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACAATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgc                            >  2:744628/1‑136 (MQ=255)                                                                                               gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCAAATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgc                            >  1:704048/1‑136 (MQ=255)                                                                                               gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGAACACAAGGGCGCCCAAAAACAATCGCCACGCACCAGGAAGCCAAACTGCAAATTACAGACCATAACCACCCCCCCATGAccc                            >  1:122572/1‑134 (MQ=18)                                                                                               gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCCGGCCGCGCTCGATCTCATGGGCGCCCAAAAACTATAGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGAACACCTACCCGCCATGAcgc                            >  2:663885/1‑136 (MQ=37)                                                                                               gAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCCCGCGGGCGGGGCGCGCACTCAATGGCGCCCAAAAACAATAGCCAGGGACCGGGAAGCCAAACAGCAATTTACAGACCATAACCACGCCGCCATGAcgc                            >  2:795847/1‑136 (MQ=16)                                                                                               caaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgc                            <  1:301790/135‑1 (MQ=255)                                                                                                aaactaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaaacccccgccgaacacctcccacgcccagaaaac                           <  2:588309‑M2/136‑100 (MQ=255)                                                                                                aaacaaacGTAGGTGGGGGTTTACCGGGGAAGCGCCGGGCGGGGGGCGGTGGATCTCATGGGCGCCCAATAACTATCGCCAGGCACCTGGAAGCCTTCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgcg                           <  2:400758/136‑1 (MQ=255)                                                                                                aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaa                                                                                >  1:560479‑M2/1‑37 (MQ=255)                                                                                                aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaa                                                                                <  2:560479‑M2/83‑47 (MQ=255)                                                                                                aaacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCCcgcgggcggcgctcgaaatcccaggccctgaaacactccccgcgaacacctcccaggcgctgaaaatcccccggcgaacaccacccacgcgcggaaacc                           <  2:597370‑M2/136‑100 (MQ=255)                                                                                                 aacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctccccgcgaacaactaccaggcgcagaaaatcccccggcgaacacctcccaggcgctgaacacc                          <  1:359025‑M2/136‑101 (MQ=255)                                                                                                 aacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGAc                                                  >  2:958989/1‑112 (MQ=255)                                                                                                 aacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGAc                                                  <  1:958989/112‑1 (MQ=255)                                                                                                 aacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGAcgcgc                          >  1:657443/1‑135 (MQ=255)                                                                                                 aacaaacGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGa                          >  1:407183/1‑136 (MQ=255)                                                                                                       cGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTcac                    <  1:267736/136‑1 (MQ=255)                                                                                                        gTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGAACTCAAGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCAGACGATCACCTCGCCGCCATGACGCGAACTcaca                   >  1:61526/1‑136 (MQ=255)                                                                                                              gCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgcc                                      <  2:628135/111‑1 (MQ=255)                                                                                                              gCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTcgcc                                      >  1:628135/1‑111 (MQ=255)                                                                                                                  gTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCAtaa         >  1:389707/1‑134 (MQ=255)                                                                                                                   tttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATcac        <  2:337024/136‑1 (MQ=255)                                                                                                                   tttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATcac        <  2:191472/136‑1 (MQ=255)                                                                                                                   tttACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATcac        <  2:669292/136‑1 (MQ=255)                                                                                                                    ttACCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctaccc       <  2:841723‑M2/136‑120 (MQ=255)                                                                                                                     tACCCGCGAAGCGCCGCGCGGGCGGCGCTCGCTCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTACTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACaa      >  1:92251/1‑136 (MQ=255)                                                                                                                     tACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACaa      >  1:11255/1‑136 (MQ=255)                                                                                                                      aCCCGCGAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgc     >  1:112026‑M2/1‑15 (MQ=255)                                                                                                                         cgcgAAGCGCCGcgcgggcggcgctcgatctcccaggcgctgaaactctcccggcgaacacctcccaggcgctgaaaatcccccggcgaacacctcccaggcgctgaaaacctcccgccaaacacctacccgccaa  <  1:880349‑M2/136‑125 (MQ=255)                                                                                                                                    |                                                                                                                             GTGGGACGCGCACGCGAGCCCCCTGGCGCACGCCTCGATATCGCGTCGTACAAACAAGGCGGTCGCGCGCGCCTGGCACAGGAGGGATTGGCCAGAAACAAACGTAGGAGCGGGTTTACCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCATGGGCGCCCAAAAACTATCGCCAGGCACCTGGAAGCCATCCTGCAATTTCCTGACGATCACCTCGCCGCCATGACGCGAACTCACAAAAACCATCACAAATCG  >  NC_002947/5990796‑5991051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.