Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_002947	3778314	3778379	66	2 [0]	[0] 2	PP_3338/PP_3339	cytochrome bd‑type quinol oxidase/hypothetical protein

CGCAACGGATGCGGCTTAATGCGCGCCATATTCGCTCGGGTGACT  >  NC_002947/3778380‑3778424 |                                             cGCAACGGATGCGGCTTAATGCGCGCCATATTCGCTCGGGTGACt  <  1:339011/45‑1 (MQ=255) cGCAACGGATGCGGCTTAATGCGCGCCATATTCGCTCGGGTGACt  >  2:339011/1‑45 (MQ=255) |                                             CGCAACGGATGCGGCTTAATGCGCGCCATATTCGCTCGGGTGACT  >  NC_002947/3778380‑3778424

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑