| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 5,224,969 | 0 | C | G | 50.0% | ‑6.7 / 11.2 | 24 | R433P (CGG→CCG) | PP_4603 | transposase |
| Reads supporting (aligned to +/- strand): ref base C (0/12); new base G (0/12); total (0/24) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
AGCGCAGCCCGGAAGGGCTGGGTGATCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATG > NC_002947/5224872‑5225109 | cgcccAGCCGGTACGGGCTGGGTTATCTCTAATAAAAAAAAATCCACCCCTTTGTTTTCTACGCACCCACGCGGCCACCGGTTTTTACCCCTGTTTCGGGGGTTGGCTAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGa < 2:275201/145‑1 (MQ=0)agccccgCCCGGTTGGGGTGGGTGATCTCAAATCAAACAAAATCCAACCCTTTTTTTTCTACCCACTCACGCGGCCACCTGTTGATACCCCCGTTGCCGGGCTTTGCTAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGa < 2:3211880/143‑1 (MQ=1) gccgCCCGGACGGGCTGGGTGCTCTCACCCCAAAAAAACGGCACCCCCTGGTTTTCTACCCACACCCGCGCCCCCCAGTTGAACCCCCCGGTCCCGGGGTTTGCGATGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAAct < 2:3999802/146‑1 (MQ=0) cctgatgggCTGGTTTTTCTATCATAAAAAAAAATGAAACCCATTGTTTTATAAGCACTATTGCGGCCACCAGTTTATACCCCAGTTTCCGGGCTTTGCGATGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCa < 2:3096507/143‑1 (MQ=1) ccgtatgggCTGGTTTATCTCTAATAAAAAAAAATGCAACCCTTTTTTTTATAAGCACTCACGCGGCCACCTGTTTATACCCCTGTTTCGGGGCTTTGCGAAGAAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCa < 2:3532246/143‑1 (MQ=1) gatgggCGGGGTGCTCTCGCATAAAACAAACGGAAACCCTTTGTTTTCTACGCACCCCCGGGGCCACCCGTTGATACCCCCGTTTCGGGGCTTGGCGACGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGa < 2:2780133/146‑1 (MQ=1) gggtGGGTTATCTCTAAAAAAAAAAAATGCAACCCTTTTTTTTCTAAGCACTCACGCGGCCACCTTTTGATCCCCCAGTTGCGGGGATTGGCTAAGAAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCtt < 2:6330025/146‑1 (MQ=1) ataaaaaaaaCTGCACCCCTTTTTTGTCAACGCACACACGGGGCCACCTGTTGATACCCCAGTTGCGGGGCTTGGGTAAGAACAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTg < 1:570145/146‑1 (MQ=0) aaaaaaaTGCAACCCTTTGTTTTATAAGCACTCAAGCGGCCACCTGTTGAAACCCCAGTTTCCGGGCTTTGCGAAGAAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGcttc < 2:3791322/146‑1 (MQ=1) aattGCAACCCATTGTTTTCTACGCACTCACGCGGCCACCTGTGGATACCCCCGTTTCGGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTgg < 2:4483587/146‑1 (MQ=1) aactGCACCCCCTTGTTTTCTACGCACTCAGGCGGCCACCTGTTGATACCCCCGTTTGCGGGCTTTGCGAAGCAACGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTgg < 2:6037670/146‑1 (MQ=1) ccttttttttATAAGCACACACGCGGCCACCTTTTTATACCCCAGTTCCCGGGCTTTGCTAAGAAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCCTCTTGGTTAACAGGt < 1:4870700/143‑1 (MQ=1) cctttGTTTTCTACGCACTCACGCGGCCACCAGTTGATACCCCTGTTCCCGGGCTTTGCGACGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGt < 2:1599049/146‑1 (MQ=1) ttatAACCACTCAAGCGGCCACCATTTTATACCCCTGTTTCGGGGCTTTGCGAAGAAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACAcc < 1:7458388/146‑1 (MQ=1) ccccacgcgcCCACCTGTTGACCCCCCTGTTGCGGGGCTGTGCTAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGc < 1:5501404/143‑1 (MQ=1) ccacgCGGCCACCTTTTGACCCCCCTGTTTCGGGGCTTGGCTACCCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCa < 1:6768805/145‑1 (MQ=1) ccacgCGGCCACCTGTTCACACCCCTGTTCCGGGGCTTGGCTAACAAACCCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCa < 1:4640824/145‑1 (MQ=1) cacgCGGCCACCAGTTGATACCCCAGTTTCGGGGCTTTGCGAAGCAACGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCaa < 2:4793380/146‑1 (MQ=0) cgcccacctTTTGAACCCCCTGTTGCGGGGGTTTGCCACGAAACCCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGa < 1:992584/146‑1 (MQ=1) tttaTACCCCCGTTTCCGGGCTTTGCGAAGAAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTgg < 2:3229194/146‑1 (MQ=0) ccttttcccGGGCTTGGCGACCCAACCCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATg < 1:5401278/142‑1 (MQ=1) cctgTTTCCGGGCTTGGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATg < 2:5907522/146‑1 (MQ=1) cctgTTGCCGGGCTTTGCGAAGCACAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATg < 2:1487541/146‑1 (MQ=0) cccgTTTCCGGGCTTGGCGACGCACCGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATCAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATg < 2:4614430/146‑1 (MQ=1) cccgTTTCCGGGCTTGGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATg < 2:5907488/146‑1 (MQ=1) | AGCGCAGCCCGGAAGGGCTGGGTGATCTCTCATCAAACAAAATGCAACCCATTGTTTTCTAAGCACTCAAGCGGCCACCAGTTGATACCCCAGTTTCCGGGCTTTGCGAAGCAAAGCCCGGACCTGCCGGTCTTGGCTTCTGGTTTCGAACTCCTCAAGACCTTGTTCAACATAAGCCTGCTTCTTGGTTAACAGGTTGTACACCAGACGTGCCAACTGATGCGCAGTGGCCTTGATG > NC_002947/5224872‑5225109 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |