Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0029475,742,4450TG30.0% 231.4 / 99.7 150intergenic (+32/+39)hutF/PP_5037formiminoglutamate deiminase/lipocalin family lipoprotein
Reads supporting (aligned to +/- strand):  ref base T (26/79);  new base G (14/31);  total (40/110)
Fisher's exact test for biased strand distribution p-value = 4.27e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 155 total aligned reads displayed.

CGCCAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCA  >  NC_002947/5742297‑5742593
                                                                                                                                                     |                                                                                                                                                     
cGCCAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGt                                                                                                                                                       <  1:1781079/149‑1 (MQ=255)
 gCCAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTg                                                                                                                                                      <  1:2898284/149‑1 (MQ=255)
   cAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGct                                                                                                                                                    <  2:4008200/149‑2 (MQ=255)
     ggTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAg                                                                                                                                                  <  2:2761702/149‑1 (MQ=255)
       tGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGcc                                                                                                                                                <  2:115101/149‑1 (MQ=255)
         cgcgATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCcg                                                                                                                                              <  1:4835336/149‑1 (MQ=255)
         cgcgATGTGATGGTGAATGGGCAAGGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCcg                                                                                                                                              <  2:3792434/149‑1 (MQ=255)
           cgATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCcgcg                                                                                                                                            <  1:6405238/149‑1 (MQ=255)
            gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGa                                                                                                                                           <  1:5583568/149‑1 (MQ=255)
            gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGa                                                                                                                                           <  1:5583186/149‑1 (MQ=255)
            gATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGa                                                                                                                                           <  1:4833634/149‑1 (MQ=255)
             aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGaa                                                                                                                                          <  2:6043969/149‑1 (MQ=255)
             aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGCTTGCACGCGaa                                                                                                                                          <  1:4600439/149‑1 (MQ=39)
             aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGCTTGCACGCGaa                                                                                                                                          <  1:825432/149‑1 (MQ=39)
             aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGCTTGCACGCGaa                                                                                                                                          <  1:4727012/149‑1 (MQ=39)
             aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGCTTGCACGCGaa                                                                                                                                          <  2:5453558/149‑1 (MQ=39)
             aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGCTTGCACGCGaa                                                                                                                                          <  2:5546978/149‑1 (MQ=39)
             aTGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGCTTGCACGCGaa                                                                                                                                          <  1:2338932/149‑1 (MQ=39)
              tgtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGTGCAAGCCCGCGAAg                                                                                                                                         <  2:4656004/149‑1 (MQ=255)
               gtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAgg                                                                                                                                        <  2:5313700/149‑1 (MQ=255)
               gtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAgg                                                                                                                                        <  2:5755669/149‑1 (MQ=255)
               gtgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGCTTGCACGCGAAgg                                                                                                                                        <  1:1126736/149‑1 (MQ=39)
               gtgATGGTGAATGGGCAATGGGTGGGGCGCCAGGGGCGGCAGGCCCAGGAAGATGACAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGCTTGCACGCGAAgg                                                                                                                                        <  2:5046506/149‑1 (MQ=38)
                tgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGCTTGCACGCGAAggg                                                                                                                                       <  2:4063812/149‑1 (MQ=39)
                tgATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGCTTGCACGCGAAggg                                                                                                                                       <  2:6363043/149‑1 (MQ=39)
                 gagggTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGt                                                                                                                                      <  1:5190189/146‑1 (MQ=255)
                 gATGGTGAATGGGCAATGGTTGGTGCGACATGGGCGGCATGCCCAGGAAGATGAAAGCTGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCTTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGt                                                                                                                                      <  1:6678214/149‑1 (MQ=255)
                 gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGt                                                                                                                                      <  2:3981076/149‑1 (MQ=255)
                 gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGt                                                                                                                                      <  1:6647240/149‑1 (MQ=255)
                 gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGt                                                                                                                                      <  2:7589477/149‑1 (MQ=255)
                 gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGt                                                                                                                                      <  2:7176620/149‑1 (MQ=255)
                 gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGt                                                                                                                                      <  2:3762843/149‑1 (MQ=255)
                 gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGt                                                                                                                                      <  2:5659855/149‑1 (MQ=255)
                 gATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGCTTGCACGCGAAgggc                                                                                                                                      <  2:1832376/149‑2 (MQ=38)
                  aTGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGCTTGCACGCGAAgggct                                                                                                                                     <  1:1214772/149‑3 (MQ=38)
                  aTGGTGAAGGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGCTTGCACGCGAAgggct                                                                                                                                     <  1:5101463/149‑3 (MQ=38)
                   tGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTg                                                                                                                                    <  1:4145949/149‑1 (MQ=255)
                   tGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGCTTGCACGCGAAGGGCTg                                                                                                                                    <  2:949198/149‑1 (MQ=38)
                      tGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAACCCTTCGCGGGCTTGCACGCGAAGGGCTgcaa                                                                                                                                 <  1:821687/149‑1 (MQ=38)
                       gAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTgcaa‑c                                                                                                                               <  1:1365238/149‑1 (MQ=255)
                           gggCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGGTGGAGCCCATCGCGGGCAACCCCGCGAAGGGGTtcaa‑cccaa                                                                                                                           >  2:4393229/1‑149 (MQ=255)
                               aaTGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGGTGGAGCCCATCGCCGGCAACCCCCCGCAAGGTTGCGa‑ccccacccc                                                                                                                       >  2:5543195/1‑149 (MQ=255)
                                     tggtgCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTGTGGGCTGAGCGTACCGGGG‑TTGGGGGGCGGACCCGGGCGTGGGAGCCCGCCCCGGGGTGCGA‑CCCGACCCCcaaaaa                                                                                                                 >  2:1202827/1‑149 (MQ=255)
                                       gtgCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGGGGTGCAGCCCATAGCGTGCCACCCCCCCAATGGGTGCAA‑CGCCACCCCcaacaaaa                                                                                                               >  2:6927900/1‑147 (MQ=255)
                                          cgcCTGGGGCGGCAGGCCCAGGAAGATGAAAGGGGGGGGGCGTTTGCCATGGTGTTGCGCCAGCTTTTGGGCTGAGGGTACGGGGG‑TTGCGTTGAAGCCGTTCGCGTGAAAGCCCGCGATGGGTTGAAA‑CGCAACCCCAAAAAACTCAg                                                                                                            <  2:6593098/149‑1 (MQ=255)
                                             cAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGGTTTGGTTTGTTGCCATTTG‑GTGTAAACACGCGGAGGGTTGGCA‑CTCAAACCCAAAAAAAACAGttg                                                                                                         >  2:2418822/1‑147 (MQ=255)
                                                  gcggcAGGCCCCGGACGATGAACGGGGGCGGGGGTTTGCCATGGTGTTGCGCCAGCTTTTGGGCTGCGCGTACGGGGG‑TTGGGTTGCCGCCGTTCGCGGGCACGCCCGCGATGGGTGGCAA‑CGCAACCCCAAAAAACTCAGTGCAtttt                                                                                                    <  2:3609333/149‑1 (MQ=255)
                                                     gcATGCCCTGGACGATGACAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTTCCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGATGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTAc                                                                                                 <  2:3682957/149‑1 (MQ=255)
                                                     gcATGCCCCGGAAGATTAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTAc                                                                                                 <  2:3683215/149‑1 (MQ=255)
                                                           ccAGGAAGATGAACGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCGGAGCGGACCGGGG‑TTGCGTTGCCGCCCTGCGCGTGCACGCCCGCGAAGGTTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTg                                                                                           <  2:4686436/149‑1 (MQ=255)
                                                                    ttaacgggggcgggcGTTTGCCACGGTGTTGCGCCTGTTTTTGGGCTGAGCGTACCGGGT‑TTGCGTTGCAGCCCTTCGCGGGCAAGCCCGCGACGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGa                                                                                  <  2:769892/142‑1 (MQ=255)
                                                                      cccgcgggcggGCTTTTCCAATGGTGGTGCGCCAGCTTTTGGGCTGTGCGAACGGGGG‑TTGCTTTCCAGCCCTTCGCGTGCACGCCCGCTACGGGTTCAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGAcg                                                                                <  1:2289011/146‑1 (MQ=255)
                                                                           gggggggcTTTTGCCTAGGTGTTGCGCCAGCTTTGGGGCTGCGCTTCCGGGGG‑TTGCGTTGCAGCCCTTCGCGTGAAAGCCCGCGACGGGTTGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGAcgcccgc                                                                           <  2:1292080/149‑1 (MQ=255)
                                                                                ggcgTTGGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGACGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGAt                                                                      <  2:5647836/149‑1 (MQ=255)
                                                                                   gTTTGCCACGGTGTTGCGCCAGCTTTTGGGGTGAGCGTCCGGGGG‑TTGCTTTGCAGCCCTCGGGGGGCAAGCCCGCGACGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCaa                                                                   <  2:3404451/149‑1 (MQ=255)
                                                                                   gTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGATGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCaa                                                                   <  2:5042130/149‑1 (MQ=255)
                                                                                       gCCATGGTGTTGCGCCAGCTTTTGGGCTGCGCGTACGGGGG‑TTGGGTTGCAGCCCTTCGGGTGCAAGCCCGCGATGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCgg                                                               <  1:5565336/149‑1 (MQ=255)
                                                                                         cAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCt                                                             <  2:4858169/149‑1 (MQ=255)
                                                                                           aGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACGGGGG‑GTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCACAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTgg                                                           <  2:5653054/149‑1 (MQ=255)
                                                                                           aGGTGTTGCGCCAGCTTTGGGGCTGAGCGTACCGGGG‑TTGCGTTGCCGCCCTGCGCGTGCAAGCCCGCGACGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTgg                                                           <  2:454205/149‑1 (MQ=255)
                                                                                              ttttGCGCCAGCTTTTGGGCTGAGCGTACGGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCTAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGgtgt                                                        <  2:5933910/147‑1 (MQ=255)
                                                                                                  gcgcCTGCTTTGGGGCGGCGCGTCCGGGGG‑TGGCGTGGCCGCCCGGCGGGTGCCCGCCCGCGAGGGTTGGCAC‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATa                                                    <  1:4220164/149‑1 (MQ=255)
                                                                                                      ctgCTTTTGGGCTGAGCGTACGGGGG‑TTGCTTTCCAGCCCTTCGCTTGAACGCCCGCGATGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATAcccc                                                <  2:7010129/147‑1 (MQ=255)
                                                                                                              gggCTGTGCTTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCTATGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCcg                                        <  2:1638115/149‑1 (MQ=255)
                                                                                                                   gcgCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGccc                                   <  2:1222191/147‑1 (MQ=255)
                                                                                                                    aGCTTACCGGGG‑TTGCGTTGCAGCCGTTCGCGTGCACGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCt                                  <  2:5868208/149‑1 (MQ=255)
                                                                                                                       gTACGGGGT‑TTGGGTTGCAGCCATTGGCTTCAAAGCCGGGTATGTGTTGAAA‑CGCAACCACAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGa                               <  2:1243507/149‑1 (MQ=255)
                                                                                                                        tACGGGGG‑TGGGGTTGCACCCCTGCGCTTGCACCCCGGCGATGGTTTGCAC‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAc                              <  1:7051603/149‑1 (MQ=255)
                                                                                                                          cggggg‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGATGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcag                            <  2:6745810/147‑1 (MQ=255)
                                                                                                                          ccGGGG‑TGGCGTTGCCGCCCTGCGCGGGCACGCCCGCGACGGGTTGCAC‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcag                            <  1:4345149/149‑1 (MQ=255)
                                                                                                                          ccGGGG‑TGGCGTGGCCCCCCTGCGCGGGCACCCCCGCGAAGGGTGGCAC‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcag                            <  2:3298265/149‑1 (MQ=255)
                                                                                                                           cGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGACGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGAcagc                           <  2:410060/149‑1 (MQ=255)
                                                                                                                              gg‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAgg                        <  2:6646568/149‑1 (MQ=255)
                                                                                                                                   gcgttgcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGAAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGCGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtct                    <  1:6910993/149‑1 (MQ=255)
                                                                                                                                    cgttgcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGTTCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtctc                   >  2:877417/1‑149 (MQ=255)
                                                                                                                                    cgttgcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTtctc                   >  1:3601002/1‑149 (MQ=255)
                                                                                                                                      ttgcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCAc                 >  1:4358543/1‑149 (MQ=255)
                                                                                                                                      ttgcAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCAc                 >  2:2816480/1‑149 (MQ=255)
                                                                                                                                      ttgcAACCCTTCGCGGGCTTGCACGCGAAGGGCTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCAc                 >  1:2739433/1‑149 (MQ=38)
                                                                                                                                         caacccTTCGCGGGCTTGCACGCGAAGGGCTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCt              >  2:1527480/4‑149 (MQ=38)
                                                                                                                                         cAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCt              >  1:6525390/1‑149 (MQ=255)
                                                                                                                                         cAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCt              >  2:3607072/1‑149 (MQ=255)
                                                                                                                                          aacccTTCGCGGGCTTGCACGCGAAGGGCTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTc             >  2:2553481/3‑149 (MQ=38)
                                                                                                                                          aGCCCTTCGCGTGCACGCCCGCGACGGGTTGCAC‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTc             <  1:1697329/149‑1 (MQ=255)
                                                                                                                                          aGCCCTTCGCGTGCAAGCCCGCGACGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTc             <  2:1613080/149‑1 (MQ=255)
                                                                                                                                          aGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTc             <  2:7535533/149‑1 (MQ=255)
                                                                                                                                           gCCCTTCGCGTGCAAGCCCGCGACGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc            <  2:393873/149‑1 (MQ=255)
                                                                                                                                           gCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc            >  1:2775439/1‑149 (MQ=255)
                                                                                                                                           gCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc            >  1:4002707/1‑149 (MQ=255)
                                                                                                                                           gCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCGGGTGTCATACCCCTGCTGCCGCGCCCTGGCCCGCAGGTTCTCACGCTcc            >  2:7433134/1‑149 (MQ=255)
                                                                                                                                           gCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGGGCAGTTTTACTAGTTGCTGAGCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTcc            >  2:7433208/1‑149 (MQ=255)
                                                                                                                                               ttCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg        >  1:3986301/1‑149 (MQ=255)
                                                                                                                                               ttCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg        >  1:4639890/1‑149 (MQ=255)
                                                                                                                                               ttCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg        >  2:1728254/1‑149 (MQ=255)
                                                                                                                                               ttCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAgg        >  1:5708674/1‑149 (MQ=255)
                                                                                                                                                 cgcgTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGcc      <  1:5543195/149‑1 (MQ=255)
                                                                                                                                                  gcgTGCACGCCCGCG‑TGGGTTTCAACCGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCg     <  1:3306210/149‑1 (MQ=255)
                                                                                                                                                     tGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCa  >  2:6758110/1‑149 (MQ=255)
                                                                                                                                                     tGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCa  >  2:6757988/1‑149 (MQ=255)
                                                                                                                                                     tGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCa  >  1:1442763/1‑149 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CGCCAGGTGCGCGATGTGATGGTGAATGGGCAATGGGTGGTGCGCCAGGGGCGGCATGCCCAGGAAGATGAAAGCGGGCGGGCGTTTGCCAAGGTGTTGCGCCAGCTTTTGGGCTGAGCGTACCGGGG‑TTGCGTTGCAGCCCTTCGCGTGCAAGCCCGCGAAGGGTTGCAA‑CGCAACCCCAAAAAACTCAGTGCATTTTTACTATTTGCTGATCGGACGCCCGCCAGATCAAGCGGCTGGTGTCATACCCCTGCTGCCGCGCCCTGGACAGCAGGTTCTCACGCTCCCAGGCCGGCA  >  NC_002947/5742297‑5742593

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑