New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	1617825 =	19 (0.360)	8 (0.170)	6/234	2.5	30.9%	intergenic (‑38/+135)	PP_1417/PP_1418	tricarboxylate transport protein TctB/tricarboxylate transport protein TctC
	?	NC_002947	1617914 =	19 (0.410)					intergenic (‑127/+46)	PP_1417/PP_1418	tricarboxylate transport protein TctB/tricarboxylate transport protein TctC

GCCAGGCCATCACGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGA  >  NC_002947/1617691‑1617911                                                                                                                                       |                                                                                       catgaccggcgaagagctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGa                                                                                       <  2:122800‑M1/2‑1 (MQ=255)   tgaccggcgaagagctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATc                                                                                     <  2:96557‑M1/4‑1 (MQ=255)     ggccaTCACGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCgg                                                                                   >  2:1165105/1‑136 (MQ=255)          cgaagagctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGcgcg                                                                              >  1:96557‑M1/126‑136 (MQ=255)          cgaagagctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGcgcg                                                                              >  1:460505‑M1/126‑136 (MQ=255)           gaagagctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGa                                                                             >  1:83658‑M1/125‑136 (MQ=255)           gaagagctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGa                                                                             >  1:111481‑M1/125‑136 (MQ=255)            tccccatggtcggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGaa                                                                            >  1:841711‑M1/124‑136 (MQ=255)            aagagctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGaa                                                                            >  1:66098‑M1/124‑136 (MQ=255)            aCGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGGCGCGATCGGGCGCGaa                                                                            <  1:1028213/136‑1 (MQ=255)              gagctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgcgtcgcGATCGGGCGCGAAGc                                                                          <  2:3541‑M1/15‑1 (MQ=255)                gctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGAAGCTg                                                                        >  1:1177626‑M1/120‑136 (MQ=255)                 ctggacggctatgtgaagaagcaagtggctgactacaaggcgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgcgtcgcGATCGGGCGCGAAGCTGc                                                                       >  1:3541‑M1/119‑136 (MQ=255)                      cggcACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAACTGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTa                                                                  <  2:496868/136‑1 (MQ=255)                         cacacaTCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAAc                                                               <  1:1122743/136‑1 (MQ=255)                              aTCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGcc                                                          <  1:1165105/136‑1 (MQ=255)                              aTCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGcc                                                          <  1:780833/136‑1 (MQ=255)                              aTCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGcc                                                          <  1:643469/136‑1 (MQ=255)                                   cagcagGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGTGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGTTGc                                                     <  2:1260518/136‑1 (MQ=255)                                   cagcagGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGc                                                     <  1:821516/136‑1 (MQ=255)                                   cagcagGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGc                                                     <  1:184391/136‑1 (MQ=255)                                            cAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGc                                                     <  1:1347262/127‑1 (MQ=255)                                            cAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGc                                                     >  2:1347262/1‑127 (MQ=255)                                               ggCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGaa                                         <  1:986121/136‑1 (MQ=255)                                                gCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCTATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAg                                        <  1:1200825/136‑1 (MQ=255)                                                         cgctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATc                               >  1:418319‑M1/79‑136 (MQ=255)                                                          gctggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg                              >  1:656237‑M1/78‑136 (MQ=255)                                                          gTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg                              <  2:1355388/136‑1 (MQ=255)                                                          gTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg                              <  2:911272/136‑1 (MQ=255)                                                             ggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGcgcg                                                                              >  2:1022262‑M1/75‑85 (MQ=255)                                                             ggccaaggaattcggcctgatccagtaagcctgtcggactcaccaccactcctgtgggagcggccttgtgtcggGATCGGGcgcg                                                                              <  1:1022262‑M1/11‑1 (MQ=255)                                                                                      gggATGGCTAAAGTCAAATCAAACTCCTGTGGCTGCGGCGTGGCGGCGCGTTGGGGCGCGAAGCGGCCGCTAAACCTGCCGTGGCTTTCTGTCCCATCCATCTTATCGGCTGTGCAAGGGGCCGCTTCGCGCCCGa  <  2:879513/136‑1 (MQ=255)                                                                                                                     ggagcggccttgtgtcggGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATc                                    >  2:1090631‑M1/19‑71 (MQ=255)                                                                                                                     ggagcggccttgtgtcggGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATc                                    <  1:1090631‑M1/53‑1 (MQ=255)                                                                                                                     ggagcggccttgtgtcggGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg                              >  1:906332‑M1/19‑77 (MQ=255)                                                                                                                     ggagcggccttgtgtcggGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCg                              <  2:906332‑M1/59‑1 (MQ=255)                                                                                                                     ggAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTg                                                                        >  2:1077604/1‑35 (MQ=255)                                                                                                                     ggAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTg                                                                        <  1:1077604/35‑1 (MQ=255)                                                                                                                                       |                                                                                       GCCAGGCCATCACGGCCAGGGCGGCACACATCGCCAGCAGGGCCAAGGCGAAAATGCGTTGAAGGATCATTGGGGAATCCTCGTTGGGATTGCTCAAGTGAAATGCAAATCCTGTGGGAGCGGCCTTGCGTCGCGATCGGGCGCGAAGCTGCCGCTAAACCTGCCGATGCGATCTGTACGAAGCATCGTATCGGCTGTGCCAGGGGCCGCTTCGCGCCCGA  >  NC_002947/1617691‑1617911

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.