New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_002947	= 652786	46 (0.870)	6 (0.160)	3/194	3.0	26.2%	coding (1960/1962 nt)	ctpL	methyl‑accepting chemotaxis protein CtpL
	?	NC_002947	4810176 =	0 (0.000)					intergenic (‑318/‑237)	PP_4234/dsbD‑II	bifunctional aldehyde oxidase/xanthine dehydrogenase/thiol/disulfide interchange protein 2
Rejected: Coverage evenness skew score above cutoff.

GGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACA  >  NC_002947/4810107‑4810311                                                                      |                                                                                                                                        gggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCaaa                                                                                                                 >  1:1364860‑M1/35‑94 (MQ=255) gggactggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCaaa                                                                                                                 <  2:1364860‑M1/60‑1 (MQ=255) gggactggccgaaaataaggttggagcgggtttaGCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCTCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAAcgcc                                                                       >  1:39809‑M1/35‑136 (MQ=255)      tggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGcccc                                                                  <  1:9140‑M1/107‑1 (MQ=255)       ggccgaaacaaacgtaggagcgggtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAAATCCAACGCCGccccc                                                                 <  2:895432‑M1/108‑1 (MQ=255)                              gtttaCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCACCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAAATCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTccc                                          <  1:680669‑M1/131‑1 (MQ=255)                                      GCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAAATCCAACGCCGCCTCCCCTCGaaaa                                  <  2:1046111‑M1/136‑1 (MQ=255)                                           GCGCCGCGCGGGCGGCGCTCGCTCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCACAAAATTCCAACGCCGCCACCCCACGAAAATAcaa                             <  2:301183‑M1/136‑1 (MQ=255)                                                            CTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCATAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCaa            <  2:518437‑M1/136‑1 (MQ=255)                                                                      caGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACa  <  2:984390/136‑1 (MQ=255)                                                                      |                                                                                                                                        GGGAGAGTTTCAGCGCCTGGGAGATCGAGCGCCGCCCGCGAAGCGCCGCGCGGGCGGCGCTCGATCTCACAGGCGCTGAAAATCCTCCGGCAAACACCTCAAAATTCCAACGCCGTCCACTCAAAATTCCAACGCCGCCCCCTCAAAATTCCAACGCCGCCTCCCCTCGAAAATCCAACAACAAAGACCCTGCAAACCCAGAACA  >  NC_002947/4810107‑4810311

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.