Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_002947 283,582 C→T S344S (TCC→TCT)  betT‑II → choline/carnitine/betaine transporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_002947283,5820CT100.0% 142.1 / NA 41S344S (TCC→TCT) betT‑IIcholine/carnitine/betaine transporter
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (20/21);  total (20/21)

CCGCGCAAGAGCTTCGACGTGTATGCCTATGGTGAAAACCGTGGCTGGCTGGGCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCCCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACAGCGCCCTGGACCAGGTGATAAATCACGGCA  >  NC_002947/283454‑283700
                                                                                                                                |                                                                                                                      
ccGCGCAAGAGCTTCGACGTGTATGCCTATGGTGAAAACCGTGGCTGGCTGGGCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGcc                                                                                                                 >  1:465095/1‑136 (MQ=255)
             tCGACGTGTATGCCTATGGTGAAAACCGTGGCTGGCTGGGCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGa                                                                                                    <  2:696102/136‑1 (MQ=255)
                          cTATGGTGAAAACCGTGGCTGGCTGGGCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGc                                                                                       <  2:1038016/136‑1 (MQ=255)
                                tGAAAACCGTGGCTGGCTGGGCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGtgctg                                                                                 >  1:171038/1‑136 (MQ=255)
                                     aCCGTGGCTGGCTGGGCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGAt                                                                            >  1:1303578/1‑136 (MQ=255)
                                       cGTGGCTGGCTGGGCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTc                                                                          >  1:1264459/1‑136 (MQ=255)
                                       cGTGGCTGGCTGGGCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTc                                                                          <  2:957436/136‑1 (MQ=255)
                                       cGTGGCTGGCTGGGCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTc                                                                          >  1:573227/1‑136 (MQ=255)
                                       cGTGGCTGGCTGGGCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCGGCTGATTc                                                                          >  2:879077/1‑136 (MQ=255)
                                            ctggctggGCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTg                                                                     >  1:1197314/1‑136 (MQ=255)
                                             gggctggGCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTgg                                                                    <  2:935438/135‑1 (MQ=255)
                                             gggctggGCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTgg                                                                    <  1:687015/135‑1 (MQ=255)
                                                  gggCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTc                                                               <  2:625730/136‑1 (MQ=255)
                                                  gggCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTACGCTGGGCTTc                                                               >  1:283988/1‑136 (MQ=255)
                                                           gACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCg                                                      <  1:1136721/136‑1 (MQ=255)
                                                                  ttCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGt                                               >  2:1358579/1‑136 (MQ=255)
                                                                   tCTACTGGGCCTGGTGGATTGCCTGGGCGCCCTTCGTGGGCCTGTTCATCGCCCGAATCACTCGTGGACCTACCATCCGCGAGTACGTCTTTGGCGAGCTGCTGATTACGATGGGCTTCACCCTGGCGTGGATGTc                                              >  2:915355/1‑136 (MQ=37)
                                                                            ccTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCgg                                     <  1:757473/136‑1 (MQ=255)
                                                                              gggtggATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCa                                   <  1:780441/135‑1 (MQ=255)
                                                                              gggtggATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCa                                   <  1:864314/135‑1 (MQ=255)
                                                                               ggtggATTGGCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCTTCTGTCGTGGCCGTTCCATCCGCGAGTTCGTCTTTTGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGGGTGGATGTCGATCTTCGGCaa                                  <  2:962160/136‑1 (MQ=255)
                                                                               ggtggATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCaa                                  >  1:544963/1‑136 (MQ=255)
                                                                               ggtggATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCaa                                  >  1:365867/1‑136 (MQ=255)
                                                                               ggtggATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCaa                                  >  1:1183431/1‑136 (MQ=255)
                                                                               ggtggATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCaa                                  <  2:283988/136‑1 (MQ=255)
                                                                                  ggATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACAg                               >  2:213349/1‑136 (MQ=255)
                                                                                        ccTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACAGCGCCCt                         >  2:622594/1‑136 (MQ=255)
                                                                                        ccTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGAGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGCATGTCGATCATCGGCAACAGCGccca                         >  2:973009/1‑135 (MQ=255)
                                                                                         cTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCTACAGCGCCCTg                        <  1:888183/136‑1 (MQ=255)
                                                                                         cTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACAGCGCCCTg                        >  1:643656/1‑136 (MQ=255)
                                                                                         cTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACAGCGCCCTg                        <  1:1358579/136‑1 (MQ=255)
                                                                                           gggCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACAGCGCCCTGGa                      >  1:241976/1‑136 (MQ=255)
                                                                                             gcgcCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCa                                   <  2:1170952/121‑1 (MQ=255)
                                                                                             gcgcCGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCa                                   >  1:1170952/1‑121 (MQ=255)
                                                                                                 cGTTCGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACAGCGCCCTGGACCAGGt                <  2:1180435/136‑1 (MQ=255)
                                                                                                     cGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACAGCGCCCTGGACCAGGTGATa            >  2:1224112/1‑136 (MQ=255)
                                                                                                     cGTGGGCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACAGCGCCCTGGACCAGGTGATa            <  2:1183431/136‑1 (MQ=255)
                                                                                                          gggtGTTGATGGCCGGCATCTCTCGTGGCCGTACCTTCCGGGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACAGCGCCCTGGACCAGGTGATAAATCa       <  2:544963/133‑1 (MQ=25)
                                                                                                          gCCTGTTCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACAGCGCCCTGGACCAGGTGATAAATCa       <  2:1115876/136‑1 (MQ=255)
                                                                                                               ttCATCGCCCGCATCTCTCGTGGGCGTACCATCGGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACTGCGCCCTGGACCTGGTGTTAAATCACGGCa  <  1:973009/136‑1 (MQ=37)
                                                                                                               ttCATCGCCCGCATCTCTCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACAGCGCCCTGGACCAGGTGATAAATCACGGCa  <  1:622594/136‑1 (MQ=255)
                                                                                                                                |                                                                                                                      
CCGCGCAAGAGCTTCGACGTGTATGCCTATGGTGAAAACCGTGGCTGGCTGGGCGGCTGGACCGTGTTCTACTGGGCCTGGTGGATTGCCTGGGCGCCGTTCGTGGGCCTGTTCATCGCCCGCATCTCCCGTGGCCGTACCATCCGCGAGTTCGTCTTTGGCGTGCTGCTGATTCCGCTGGGCTTCACCCTGGCGTGGATGTCGATCTTCGGCAACAGCGCCCTGGACCAGGTGATAAATCACGGCA  >  NC_002947/283454‑283700

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑