| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_002947 | 3,368,556 | T→C | intergenic (+257/‑104) | PP_2962 → / → PP_2964 | alcohol dehydrogenase/transposase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_002947 | 3,368,556 | 0 | T | C | 94.7% | 59.4 / ‑3.9 | 19 | intergenic (+257/‑104) | PP_2962/PP_2964 | alcohol dehydrogenase/transposase |
| Reads supporting (aligned to +/- strand): ref base T (0/1); new base C (7/11); total (7/12) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.11e-01 | |||||||||||
GGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGATGTGTTCAATGGCATCGGT > NC_002947/3368423‑3368679 | ggTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGCTc < 1:669550/136‑1 (MQ=255) tggtgACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAAGGt < 2:854134/136‑1 (MQ=255) tggtgACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAAGGt > 1:1081661/1‑136 (MQ=255) cgtcgCAACTGTCGGGAGGAAAGGGTGCGGCAGAAAAATCTATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGCTCATTCGCTCTGTAAATATATGATTTAAAAGGTTATTCgagg > 1:679082/1‑135 (MQ=255) gTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCAc > 1:1096834/1‑136 (MQ=255) cAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTg > 2:528973/1‑136 (MQ=255) cAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTg < 2:267768/136‑1 (MQ=255) aGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTgg < 2:724151/136‑1 (MQ=255) aGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTgg < 2:212150/136‑1 (MQ=255) aaaaaTCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCt < 2:287301/136‑1 (MQ=255) aaTCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGc < 2:229836/136‑1 (MQ=255) ggggTTATGCCGAGATAAGGCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCt < 1:132938/136‑1 (MQ=255) ggggTTATGCCGAGATAAGGCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCt < 2:330243/136‑1 (MQ=255) ttATGCCGAGATAAGGCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTggg > 2:1152601/1‑136 (MQ=255) ttATGCCGAGATAAGGCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTggg > 1:879227/1‑136 (MQ=255) tATGCCGAGATAAGGCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTgggg < 2:1096834/136‑1 (MQ=255) tATGCCGAGATAAGGCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTgggg > 2:934415/1‑136 (MQ=255) ggCAAAAATTAGGACATTCGCTCTGTAAATATATGATTTAAAATGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGATGTGTTCAATg < 2:1109420/136‑1 (MQ=255) ttAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGATGTGTTCAATGGCATCGGt < 1:195351/136‑1 (MQ=255) | GGTCAAGCTGGCTGCAGTCGAAGTGGTGACTTCGTCGCTACTGTCGGGAGGAAAGGGTGAGGCAGAAAAATCGATCATTCACGCGGGGTTATACCGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGCTTTTGCCTCGCTTGGGGGATGTGTTCAATGGCATCGGT > NC_002947/3368423‑3368679 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |