New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 2729418	37 (0.410)	22 (0.260)	19/242	6.0	32.8%	noncoding (27/76 nt)	gltW	tRNA‑Glu
	?	NC_000913_3_bme_pgi	4168417 =	55 (0.640)					noncoding (46/76 nt)	gltT	tRNA‑Glu
Rejected: Coverage evenness skew score above cutoff.

CAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAC  >  NC_000913_3_bme_pgi/2729269‑2729566                                                                                                                                                       |                                                                                                                                                     cAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGgt                                                                                                                                                      <  4:394729/150‑1 (MQ=255)    cTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTc                                                                                                                                                   <  2:76832/150‑1 (MQ=255)    cTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTc                                                                                                                                                   >  1:76832/1‑150 (MQ=255)        aTCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTgg                                                                                                                                               <  1:810165/150‑1 (MQ=255)         tCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTggg                                                                                                                                              <  1:691296/150‑1 (MQ=255)           cAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGcc                                                                                                                                            >  3:65206/1‑150 (MQ=255)             gATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGcccc                                                                                                                                          <  1:139784/150‑3 (MQ=255)              aTTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCctct                                                                                                                                         >  4:120065/1‑150 (MQ=255)                 tttAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGa                                                                                                                                      <  2:73191/150‑1 (MQ=255)                       gagCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAgg                                                                                                                                >  1:664578/1‑150 (MQ=255)                          cAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGa                                                                                                                             <  1:975297/150‑1 (MQ=255)                            aaTATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGaca                                                                                                                           <  4:126610/150‑1 (MQ=255)                                 atCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGaaa                                                                                                                      <  1:958189/150‑1 (MQ=255)                                   cAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAAt                                                                                                                    <  2:124706/150‑1 (MQ=255)                                     aaCAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTg                                                                                                                  <  4:582613/150‑1 (MQ=255)                                        aaGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAg                                                                                                                                 <  1:690021/132‑1 (MQ=255)                                        aaGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAg                                                                                                                                 >  2:690021/1‑132 (MQ=255)                                          gACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCctc                                                                                                                                          >  2:1070105/1‑121 (MQ=255)                                          gACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCctc                                                                                                                                          <  1:1070105/121‑1 (MQ=255)                                           aCTTAACAGTCTGTTTTGAGATATTGAGGTTGGTGTCTTTCACTCACAAAC‑CAGTAAGTGGTGTCCCCTCGAGCATTCGGACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTAGGCCTCTAGAAGAAGGGGCCACGAAATTTGCTTATc                                                                                                            <  4:337989/150‑1 (MQ=14)                                           aCTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCAC‑CACCAACACAGCAAGTGGCGTCCTCTACGGGATTCGACCGCCTTTTACCACCGTGAAAGGGCGGTGTCCTGGGACTCTAGACGAAGGGGACATGAAAATTGCTTATc                                                                                                            <  4:337982/150‑1 (MQ=14)                                               aaCAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCAcgc                                                                                                        >  2:546136/1‑150 (MQ=39)                                                    tCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGc                                                                                                   >  1:268318/1‑150 (MQ=35)                                                     cTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCg                                                                                                  <  1:444403/150‑1 (MQ=34)                                                        ttttGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGCACCCCTGTTACCGCCGTGAAAGGGCGgt                                                                                                                                                      <  1:920724/95‑1 (MQ=18)                                                        ttttGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGgt                                                                                                                                                      >  2:920724/1‑95 (MQ=33)                                                           tGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCAACGCGTGataa                                                                                            <  2:985689/150‑2 (MQ=255)                                                             agaTATTGAGGTCGGCGACTTTCACTCACAAAC‑CATCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATAttt                                                                                          <  3:11325/150‑1 (MQ=17)                                                             agaTATTGAGGTCGGCGACTTTCACTCACAAAC‑CATCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATAttt                                                                                          >  4:11325/1‑150 (MQ=17)                                                             agaTATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCt                                                                                                                >  4:26523/1‑128 (MQ=33)                                                             agaTATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCt                                                                                                                <  3:26523/128‑1 (MQ=33)                                                              gaTATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCAcgc                                                                                                        <  2:81589/135‑1 (MQ=33)                                                              gaTATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCAcgc                                                                                                        >  1:81589/1‑135 (MQ=33)                                                               atatTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGAc                                                                                                                                     >  4:523522/1‑105 (MQ=33)                                                               atatTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGAc                                                                                                                                     <  3:523522/105‑1 (MQ=33)                                                               atatTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTc                                                                                        <  3:72513/150‑1 (MQ=32)                                                                 atTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCgt                                                                                      <  3:120065/150‑1 (MQ=32)                                                                   tGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCgtgt                                                                                    <  2:1755/150‑1 (MQ=31)                                                                                                                                                 gggCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTa       <  1:43663/150‑1 (MQ=11)                                                                                                                                                      gtgtCCTGGGCCTCTAGACGAAGGGNACACGAAAATTGNTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCGCTCCCAACGCGTAAACGCCTTGCTATTCAc  >  1:708523/1‑150 (MQ=17)                                                                                                                                                       |                                                                                                                                                     CAGCTTGATCCAGATTTTTAAAGAGCAAATATATCAAACAAGACTTAACAGTCTGTTTTGAGATATTGAGGTCGGCGACTTTCACTCACAAAC‑CAGCAAGTGGCGTCCCCTAGGGGATTCGAACCCCTGTTACCGCCGTGAAAGGGCGGTGTCCTGGGCCTCTAGACGAAGGGGACACGAAAATTGCTTATCACGCGTTGCGTGATATTTTCGTGTAGGGTGAGCTTTCATTAATAGAAAGCGAACGGCCTTATTCTCTTCAGCCTCACTCCCAACGCGTAAACGCCTTGCTATTCAC  >  NC_000913_3_bme_pgi/2729269‑2729566

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.