| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 446785 | 109 (0.820) | 21 (0.170) | 18/234 | 11.7 | 17.7% | intergenic (‑119/+30) | yajR/cyoE | putative transporter/protoheme IX farnesyltransferase |
| ? | NC_000913_3_bme_pgi | = 446789 | 95 (0.780) | intergenic (‑123/+26) | yajR/cyoE | putative transporter/protoheme IX farnesyltransferase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TCGCGCGCCTCTCACCTGGCGTCATTTTATAATCGTTCATTACCACCTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/446627‑446785‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaggtgcTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTACACTAGTCGCGAATTTAAAACAGAGGTGGTAATGAACGATTATAAAATGACGCCAGG < NC_000913_3_bme_pgi/446789‑446641 TCGCGCGCCTCTCACCTGGCGTCATTTTATAATCGTTCATTACCACCTCTGTTTTACATTCGCGACTAGTGCAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAA < 1:718176/150‑1TCGCGCGCCTCTCACCTGGCGTCATTTTATAATCGTTCATTACCACCTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAA < 2:389409/150‑1 CGCGCGCCTCTCACCTGGCGTCATTTTATAATCGTTCATTACCACCTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAA > 1:363094/1‑150 GCGCCTCTCACCTGGCGTCATTTTATAATCGTTCATTACCACCTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAA < 1:936638/150‑1 CGCCTCTCACCTGGCGTCATTTTATAATCGTTCATTACCACCTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAG < 4:794811/150‑1 TCTCACCTGGCGTCATTTTATAATCGTTCATTACCACCTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGC > 1:493624/1‑150 ACCTGGCGTCATTTTATAATCGTTCATTACCACCTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACG > 2:464074/1‑150 GTCATTTTATAATCGTTCATTACCACCTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTT < 3:136323/150‑1 ATTTTATAATCGTTCATTACCCCCTCTGTTTTAAATTCGCGACTAGTGTAACGCGGCCAACGAATGGGGTAAACATGCGGATTTTTTAGGAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTT < 1:555240/150‑1 TTTATAATCGTTCGTTACCACCTCTGTTTTAAATTCGCAACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTTTC < 1:1579891/150‑1 AATCGTTCATTACCACCTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTTTCTTAGC < 1:464074/150‑1 TCGTTCATTACCACCTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAA > 3:685312/1‑121 TCGTTCATTACCACCTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAA < 4:685312/121‑1 TTCATTACCACCTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTT > 1:340513/1‑138 TTCATTACCACCTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTT < 2:340513/138‑1 CTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTG < 1:117916/112‑1 CTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTG > 2:117916/1‑112 GTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTC < 2:26037/150‑1 TTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTT > 1:80934/1‑119 TTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTT < 2:80934/119‑1 TCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTTT > 1:1527776/1‑115 TCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTTT < 2:1527776/115‑1 TAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTTT > 1:1535380/1‑108 TAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTTT < 2:1535380/108‑1 ACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTTTCTTAGC > 1:82576/1‑98 ACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTTTCTTAGC < 2:82576/98‑1 GGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACC > 3:538901/1‑142 GGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACC < 4:538901/142‑1 GGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGG < 2:1397233/66‑1 GGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGG > 1:1397233/1‑66 TAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTTTCTTA < 2:994319/66‑1 TAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGCTACGGCACCTTTTTTCTTA > 1:994319/1‑66 TAAGAAAAAAGGTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTACACTAGTCGCGAATTTAAAACAGAGGTGGTAATGAACGATTAT > 1:743074/1‑150 AAAAAGGTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTACACTAGTCGCGAATTTAAAACAGAGGTGGTAATGAACGATTATAAAAT < 1:1234864/150‑1 AAAAAGGTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTACACTAGTCGCGAATTTAAAACAGAGGTGGTAATGAACGATTATAAAAT < 3:690937/150‑1 AAAAGGTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTACACTAGTCGCGAATTTAAAACAGAGGTGGTAATGAACGATTATAAAATG > 1:104358/1‑150 AAAAGGTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTACACTAGTCGCGAATTTAAAACAGAGGTGGTAATGAACGATTATAAAATG > 3:576307/1‑150 AAAAGGTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTACACTAGTCGCGAATTTAAAACAGAGGTGGTAATGAACGATTATAAAATG > 2:820418/1‑150 AAAAGGTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCT > 3:816311/1‑47 AAAAGGTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCT < 4:816311/47‑1 AAAGGTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAATAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTACACTAGTCGCGAATTTAAAACAGAGGTGGTAATGAACGATTATAAAATGA < 2:1133325/150‑1 AAAGGTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTACACTAGTCGCGAATTTAAAACAGAGGTGGTAATGAACGATTATAAAATGA > 1:308006/1‑150 AAAGGTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTACACTAGTCGCGAATTTAAAACA < 1:1480863/122‑1 AAAGGTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTACACTAGTCGCGAATTTAAAACA > 2:1480863/1‑122 GTGCTACGGCACCTTTTTTCTTAGCATTAGAAACATAGCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTACACTAGTCGCGAATTTAAAACAGAGGTGGTAATGAACGATTATAAAATGACGCC > 2:609045/1‑150 TGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTA > 2:1231745/1‑95 TGCTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTA < 1:1231745/95‑1 CTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTACACTAGTCGCGAATTTAAAACAGAGGTGGTAATGAACGATTATAAAATGACGCCAGG < 2:743074/150‑1 TCGCGCGCCTCTCACCTGGCGTCATTTTATAATCGTTCATTACCACCTCTGTTTTAAATTCGCGACTAGTGTAAAGCGGCAAACGAATGGGGTAAACATGCGGATTTTTTAGTAAATATTTCGAGAGGGATATGTTTCTAATGCTAAGAAAAAAGGTGC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/446627‑446785‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaggtgcTACGGCACCTTTTTTCTTAGCATTAGAAACATATCCCTCTCGAAATATTTACTAAAAAATCCGCATGTTTACCCCATTCGTTTGCCGCTTTACACTAGTCGCGAATTTAAAACAGAGGTGGTAATGAACGATTATAAAATGACGCCAGG < NC_000913_3_bme_pgi/446789‑446641 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |