New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 1357753	NA (NA)	4 (0.300)	4/242	1.3	NA	intergenic (‑85/+49)	ymjA/puuP	DUF2543 family protein/putrescine importer
	?	NC_000913_3_bme_pgi	= 1357792	NA (NA)					noncoding (23/30 nt)	REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences	REP111 (repetitive extragenic palindromic) element; contains 1 REP sequences

TCTGCGCATTCGGTCGCGTACTCATCGGCAATATCAAAATATTTTAGCGGGATATCGTGGTTCATTATTTGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCCTAACGAAGCCCAT  >  NC_000913_3_bme_pgi/1357604‑1357901                                                                                                                                                      |                                                                                                                                                     tctGCGCATTCGGTCGCGTACTCATCGGCAATATCAAAATATTTTAGCGGGATATCGTGGTTCATTATTTGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATg                                                                                                                                                      <  3:22481/150‑1 (MQ=255)                                     aaaTATTTTAGCGGGATATCGTGGTTCATTATTTGCCCCTGGGGCTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCG                                                                                                                  <  4:59361‑M2/150‑1 (MQ=255)                                                              tCATTATTTGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCcattaactataaaaagatgtat                                                                                         <  4:85155‑M2/150‑23 (MQ=255)                                                                 ttattTGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGgcgcggcgcattatcctgcctgagggtaacgcgccgcgccattaactataaaaagatgtatgac                                                                                      >  1:96030‑M1/1‑86 (MQ=255)                                                                       gCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCcattaactataaaaagatgtatgacccggat                                                                                >  3:85155‑M2/1‑119 (MQ=255)                                                                              gggTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCcattaactataaaaagatgtatgacccggatcacgagt                                                                         >  1:158974‑M2/1‑112 (MQ=255)                                                                                  tAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACcatc                                                                     <  3:59361/150‑1 (MQ=255)                                                                                                                 aCTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGgcgcggcgcattatcctgcctgagggtaacgcgccgcgccattaactataaaaagatgtatgacccggatcacgagtgctatcatccgcccttatgcttagcgcattaaccc                                      >  1:158974‑M1/1‑38 (MQ=255)                                                                                                                        aTCCGGGTCATACATCTTTTTATAGTTAATGgcgcggcgcattatcctgcctgagggtaacgcgccgcgccattaactataaaaagatgtatgacccggatcacgagtgctatcatccgcccttatgcttagcgcattaaccccaggggc                               >  3:85155‑M1/1‑31 (MQ=255)                                                                                                                              gTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCcattaactataaaaagatgtatgacccggatcacgagtgctatcatccgcccttatgcttagcgcattaaccccaggggcaaataa                         >  1:96030‑M2/1‑64 (MQ=255)                                                                                                                                 aTACATCTTTTTATAGTTAATGgcgcggcgcattatcctgcctgagggtaacgcgccgcgccattaactataaaaagatgtatgacccggatcacgagtgctatcatccgcccttatgcttagcgcattaaccccaggggcaaataatga                      <  4:85155‑M1/150‑129 (MQ=255)                                                                                                                                      tCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGTGATAGCGGCGGATCAGATACCATAAat                         <  1:36901/142‑1 (MQ=255)                                                                                                                                      tCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGTGATAGCGGCGGATCAGATACCATAAat                         >  2:36901/1‑142 (MQ=255)                                                                                                                                                     tGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCCTAACGAAGCCCAt  <  2:70416/150‑1 (MQ=255)                                                                                                                                                      |                                                                                                                                                     TCTGCGCATTCGGTCGCGTACTCATCGGCAATATCAAAATATTTTAGCGGGATATCGTGGTTCATTATTTGCCCCTGGGGTTAATGCGCTAAGCATAAGGGCGGATGATAGCACTCGTGATCCGGGTCATACATCTTTTTATAGTTAATGGCGCGGCGCGTTACCCTCAGGCAGGATAATGCGCCGCGCATCCGACTATTACGTTTCACTCACCGGCGTTCTGTCACCATCATACAACGGCACTTTGCGATAGCGGCGGATCAGATACCATAAATATGCGCCGCCTAACGAAGCCCAT  >  NC_000913_3_bme_pgi/1357604‑1357901

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.