New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	3652037 =	NA (NA)	11 (0.770)	10/258	0.5	100%	intergenic (+6/+145)	yhiS/insH1	pseudogene/IS5 transposase and trans‑activator
	?	NC_000913_3_bme_pgi	= 3992709	0 (0.000)					coding (1557/2547 nt)	cyaA	adenylate cyclase

TATTGAGTCGATCATCAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATCGTTAACCTGGAATATGACCCGACAGCGGCGTTCCGCAAT  >  NC_000913_3_bme_pgi/3992568‑3992856                                                                                                                                              |                                                                                                                                                    aatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGga                                                                                                                                             >  3:96999‑M2/137‑150 (MQ=255)                      tcagccGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttc                                                                                                                        <  2:93763‑M2/150‑30 (MQ=255)                                                    tAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcat                                                                                          >  1:93763‑M2/1‑91 (MQ=255)                                                          ttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGtt                                                                                                                                                   >  1:159861‑M2/80‑87 (MQ=255)                                                          ttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGtt                                                                                                                                                   <  2:159861‑M2/8‑1 (MQ=255)                                                                         gaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGccc                                                                     <  4:96999‑M2/86‑1 (MQ=255)                                                                           ttAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTAGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccg                                                                   <  1:99468‑M2/150‑83 (MQ=255)                                                                              ctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGtgtg                                                                <  4:79755‑M2/91‑1 (MQ=255)                                                                              aCGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctc                                                                      >  2:161000‑M2/1‑65 (MQ=255)                                                                              aCGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctc                                                                      <  1:161000‑M2/144‑80 (MQ=255)                                                                                  ccTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgc                                                            <  4:49885‑M2/150‑90 (MQ=255)                                                                                      tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAg                                                                                   <  3:69361‑M2/72‑1 (MQ=255)                                                                                      tggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAg                                                                                   >  4:69361‑M2/52‑123 (MQ=255)                                                                                      ctgACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttg                                                        <  4:92582‑M2/150‑94 (MQ=255)                                                                                                    ccGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagc                                                 >  3:100171‑M2/1‑43 (MQ=255)                                                                                                    ccGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagc                                                 <  4:100171‑M2/143‑101 (MQ=255)                                                                                                    aaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTATCGCACCATTTCCCGCTGCGCTTACCTGCACCGCCACCGAAGGCGCTCTACAGCCCGCGTGAGATCCGCCATCTGGCGATAAt                                          >  2:41884‑M2/38‑150 (MQ=255)                                                                                                       catgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATCGt                                       >  4:19558‑M2/35‑150 (MQ=255)                                                                                                           tataTTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtt                                   >  3:49885‑M2/1‑36 (MQ=255)                                                                                                                 tatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATCGTTAACCTGGaa                             <  2:147431‑M2/126‑1 (MQ=255)                                                                                                                                            aaggaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagttttt  <  1:116528‑M2/150‑148 (MQ=255)                                                                                                                                              |                                                                                                                                                    TATTGAGTCGATCATCAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATCGTTAACCTGGAATATGACCCGACAGCGGCGTTCCGCAAT  >  NC_000913_3_bme_pgi/3992568‑3992856

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.