| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 1757687 | 112 (1.050) | 20 (0.210) | 19/220 | 7.5 | 16.6% | intergenic (+30/+34) | lpp/ldtE | murein lipoprotein/murein L,D‑transpeptidase |
| ? | NC_000913_3_bme_pgi | = 1757688 | 102 (1.080) | intergenic (+31/+33) | lpp/ldtE | murein lipoprotein/murein L,D‑transpeptidase | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/1757532‑1757687‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaatggcgcacaATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACT < NC_000913_3_bme_pgi/1757688‑1757540 AACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGG < 2:1305703/150‑1AACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTCAAAAATGG > 4:201814/1‑150 CGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCG < 1:20681/150‑1 TAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCAC > 3:701175/1‑150 TAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCAC > 1:687688/1‑150 CCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAA > 1:11599/1‑133 CCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAA < 2:11599/133‑1 CTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATT < 3:432042/150‑1 gGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTT < 4:417021/149‑1 CGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCAT < 1:211744/132‑1 CGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCAT > 2:211744/1‑132 GCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTAC > 2:1162860/1‑150 GTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGG < 2:923633/99‑1 GTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGG > 1:923633/1‑99 TTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCG > 3:41102/1‑144 TTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCG < 4:41102/144‑1 ACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTAC < 4:41494/121‑1 ACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTAC > 3:41494/1‑121 GCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATT > 2:1234312/1‑129 GCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATT < 1:1234312/129‑1 TAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCA < 1:1162860/150‑1 GGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTT < 4:727641/76‑1 GGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTT > 3:727641/1‑76 ATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCA < 1:843965/64‑1 ATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCA > 2:843965/1‑64 TACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTA < 1:31559/99‑1 TACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTA > 2:31559/1‑99 TGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCC > 2:1105818/1‑83 TGAAGTGAAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCC < 1:1105818/83‑1 AAAAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCT < 1:306526/150‑1 AAATGGCGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCA < 2:496889/150‑1 CGCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGT < 1:930659/150‑1 GCACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTC > 2:687688/1‑150 CACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCTATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGC < 2:819304/104‑1 CACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTGGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCA > 1:207540/1‑150 CACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGC > 1:819304/1‑104 CACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGC > 3:579985/1‑89 CACAATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGC < 4:579985/89‑1 AATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACT > 1:58126/1‑150 AACGCTAAAGTTGACCAGCTGAGCAACGACGTGAACGCAATGCGTTCCGACGTTCAGGCTGCTAAAGATGACGCAGCTCGTGCTAACCAGCGTCTGGACAACATGGCTACTAAATACCGCAAGTAATAGTACCTGTGAAGTGAAAAATGGCGCACA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/1757532‑1757687‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaatggcgcacaATGTGCGCCATTTTTCACTTCACAGGTACTATTACTTGCGGTATTTAGTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACT < NC_000913_3_bme_pgi/1757688‑1757540 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |