New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	4542683 =	40 (0.640)	7 (0.120)	7/262	7.0	12.7%	intergenic (+49/‑433)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
	?	NC_000913_3_bme_pgi	4542997 =	59 (1.000)					intergenic (+363/‑119)	fimE/fimA	tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin)
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGT  >  NC_000913_3_bme_pgi/4542536‑4542827                                                                                                                                                    |                                                                                                                                                 cATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAACGAACTACTTAAATAAACGAAAAATTAAAAAGAGAAGAGGATTGATTTAACTTAGTGAATATAAAGTTAAAAAAACAAATAAATACAAGACAAtt                                                                                                                                                 >  2:931304/1‑149 (MQ=255)   tACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTga                                                                                                                                               >  2:38177/1‑148 (MQ=255)           gtcataCCGCCAGTAATGCTGCACGATTAGCCGGAATATGGGAAAAAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGATTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGCCCAAAc                                                                                                                                       >  2:103529/4‑149 (MQ=255)            ttATACCCCAAGTAAACCTGCTCGTTTTGACGGATTAAGGGAAAGAAATAATATAATAAACGAAAAATTAAAAAGAGAAGAGGTTTTAGTTAACGAATTAATTATGTAGTTAAAAAAAAAAATAAATGTAATACGTGTGGGGCCatttt                                                                                                                                      <  2:496260/149‑5 (MQ=255)                 ccGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAAAAATCTCATAAAAGAAAAATGAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCa                                                                                                                                 >  1:719421/1‑149 (MQ=255)                  cGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCat                                                                                                                                >  1:622230/1‑149 (MQ=255)                       gTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAGATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAAAAAAAATAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATCTCat                                                                                                                           <  2:849210/149‑1 (MQ=255)                             ctgctCGTTTTGCCGGATTATGGGAAAGAAATAATCTCAAAAAAGAAAAATTAAAAAGAAGAACGGTTTGATTTACCTTATTGAGACTAAAGTTAAACAAACAAATAAATACAAGAAAATTGAGTCAAAACTGACAATAGCaagaataa                                                                                                                     >  2:531641/1‑149 (MQ=255)                                         ccGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttt                                                                                                         <  2:558590/149‑1 (MQ=255)                                           ggATTATGGGAAAGAAAAAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTAtttttt                                                                                                       <  1:225954/149‑1 (MQ=255)                                            gATTAGGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTtc                                                                                                      >  2:963971/1‑149 (MQ=255)                                                    gaaagaaaTAATCTCGTAAACGAAGAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAATTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCCTATCATAAATAAGTTACGTATTTTTTCTCAATCAt                                                                                              >  2:636166/1‑149 (MQ=255)                                                      aagaaaTAATCTCATAAACGAAACATTAGCAATAAGAAAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACAGTCCATATCATAACTAAGTTAAGTATTTTTTCTCAAGcccaa                                                                                            >  2:1072146/1‑145 (MQ=255)                                                         aaaTAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATaaaaa                                                                                         >  1:729558/1‑149 (MQ=255)                                                               tctcATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTTAAGCATAAAAATATTaa                                                                                   >  1:840772/1‑149 (MQ=255)                                                                   aTAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa                                                                               <  1:557810/149‑1 (MQ=255)                                                                   aTAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGAGGCGTTACAGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa                                                                               >  1:817972/1‑149 (MQ=255)                                                                   aTAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTCAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTaaaaaa                                                                               <  1:540651/149‑1 (MQ=255)                                                                       aCGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCCAGCATAAAAATATTAAAAAACGAc                                                                           <  1:963971/149‑1 (MQ=255)                                                                                  aaaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCt                                                                >  2:671452/1‑149 (MQ=255)                                                                                   aaaGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTa                                                               >  2:769369/1‑149 (MQ=255)                                                                                    aagagaagagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATAGCATAAATAAGTTACGTATTTTTTCTCAAACATAAAAATATTAAAAAACGACAAAAAGCATCTaa                                                              >  2:895925/1‑149 (MQ=255)                                                                                          agatGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGttt                                                        <  1:679839/149‑1 (MQ=255)                                                                                           gagGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTg                                                       >  2:695352/1‑149 (MQ=255)                                                                                            agGGTTGATTTAAGATATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGa                                                      <  2:240729/149‑1 (MQ=255)                                                                                               tttGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGatat                                                   >  1:445555/1‑149 (MQ=255)                                                                                                    tttAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGTACCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTaaa                                              >  2:1015705/1‑149 (MQ=255)                                                                                                               gATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGCCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGATTGATATGTAAATTATTTCTAtt                                   >  2:185551/1‑149 (MQ=255)                                                                                                                   ataaAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTTTATTGTaa                               >  1:57913/1‑149 (MQ=255)                                                                                                                        gTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaa                          <  1:1055708/149‑1 (MQ=255)                                                                                                                         ttAAAAAAACAAATAAATACAAAGCAATTGGGGCCAAACTGTCCATATCACAAATACGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTATCTGTTTGATATGTAAATTATTTCTATTGTAaattaat                         <  1:326148/149‑1 (MQ=255)                                                                                                                          tAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAaattaatt                        <  1:671452/149‑1 (MQ=255)                                                                                                                           aaaaaaaCAAATAAATACAAGACAATTGTGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAAttt                       <  1:190219/149‑1 (MQ=255)                                                                                                                            aaaaacAAAATACATACCAAACAATAGGGGCTAAACTGTCCATATCATACATCAGTCACGTATTTTTTCTCAAGCATAAGAATCTTAAAAAACGACAAAAAGCATCTAACCGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTc                      <  1:931304/149‑1 (MQ=255)                                                                                                                                 aCAAATAAAAACAAGACAATGGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATc                 <  1:843904/149‑1 (MQ=255)                                                                                                                                   aaataaatACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCAc               <  1:582684/149‑1 (MQ=255)                                                                                                                                      taaataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTc            >  1:324533/1‑149 (MQ=255)                                                                                                                                         ataCAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGc         <  1:695352/149‑1 (MQ=255)                                                                                                                                            tctgACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCtat      <  1:875351/146‑1 (MQ=255)                                                                                                                                                aCAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTTAATTATTTTCAAATCACCTCCGCtataaga  >  2:875351/1‑146 (MQ=255)                                                                                                                                                    |                                                                                                                                                 CATACTGTGCGTTATACCGCCAGTAATGCTGCTCGTTTTGCCGGATTATGGGAAAGAAATAATCTCATAAACGAAAAATTAAAAAGAGAAGAGGTTTGATTTAACTTATTGATAATAAAGTTAAAAAAACAAATAAATACAAGACAATTGGGGCCAAACTGTCCATATCATAAATAAGTTACGTATTTTTTCTCAAGCATAAAAATATTAAAAAACGACAAAAAGCATCTAACTGTTTGATATGTAAATTATTTCTATTGTAAATTAATTTCACATCACCTCCGCTATATGT  >  NC_000913_3_bme_pgi/4542536‑4542827

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.