New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 4326185	108 (0.440)	22 (0.150) +AGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAG	6/116	18.9	25.7%	noncoding (383/583 nt)	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP325 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_bme_pgi	= 4374597	NA (NA)					noncoding (99/99 nt)	RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP329 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.

GCCGGATGCGGCGTAAACGCCTTATCCGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_bme_pgi/4326152‑4326185 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCAT  <  NC_000913_3_bme_pgi/4374597‑4374560                                   ||||||||||||||||||||||||||||||||||||||||                                       GCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGC               <  2:2862009/99‑1 GCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGC               <  2:463624/99‑1 GCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGC               <  2:503636/99‑1 GCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGC               <  1:5442322/99‑1 GCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGC               <  1:1122856/99‑1 GCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGG                <  1:2372997/98‑1 GCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGG                <  2:5558256/98‑1 GCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGG                <  1:3104423/98‑1 GCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGG                <  1:3480274/98‑1 GCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGG                <  1:914903/98‑1 GCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGG                <  1:4705822/98‑1 GCCGGATGCAGCGTAAACGCCGTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGC               <  2:3511548/99‑1  CCGGATGCAGCGTAAGCGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGG                <  2:2488785/97‑1  CCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGCC              <  1:4948406/99‑1  CCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGCC              <  1:394738/99‑1  CCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGCC              <  1:2711014/99‑1  CCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGCC              <  1:1623922/99‑1   CGGATGCAGCGTAAACGCCTTATCTGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGCCTA            <  1:5350397/100‑1   CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGCCTA            <  1:392073/100‑1   CGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGCCTA            <  1:2971720/100‑1            CGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATTCGCTACGCTTATCAGGCCTACATCGTGC    <  2:137899/99‑1             GTAAACGCCTTATCCGGCCTACAGTTAATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGTTTCGCTACGCTTATCAGGCCTACATCGTGCAT  <  2:645370/100‑1                                   ||||||||||||||||||||||||||||||||||||||||                                       GCCGGATGCGGCGTAAACGCCTTATCCGGCCTAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_bme_pgi/4326152‑4326185 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGATTCGCTACGCTTATCAGGCCTACATCGTGCAT  <  NC_000913_3_bme_pgi/4374597‑4374560

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.