New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	3895222 =	29 (0.960)	3 (0.110)	3/264	4.2	10.6%	intergenic (+4/+50)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
	?	NC_000913_3_bme_pgi	3895257 =	24 (0.860)					intergenic (+39/+15)	chrR/adeP	chromate reductase, Class I, flavoprotein/adenine permease, high affinity; adenine:H+ symporter
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

AACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCAT  >  NC_000913_3_bme_pgi/3895078‑3895370                                                                                                                                                 |                                                                                                                                                     tgcgagtcGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATaaaaaa                                                                                                                                                  <  1:254105/142‑1 (MQ=255)  aCAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAAc                                                                                                                                                 <  1:332700/149‑1 (MQ=255)      ggcGGAAGTTATGGGCGGGGGGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTCATTGTTAAACCCGc                                                                                                                                             <  2:5584/147‑1 (MQ=255)       ccGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGcc                                                                                                                                            >  1:432295/1‑149 (MQ=255)            aTTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGCCCGGGCAATTGACCGCATTTGGTGCGTTTATTCAGCGAGTTACGATCTAACTAAAAAACCCGCTAGCac                                                                                                                                       >  1:284997/1‑148 (MQ=255)                 tGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATcatg                                                                                                                                  >  1:65712/1‑149 (MQ=255)                     cggcggTATTTAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATcatgcatg                                                                                                                              <  2:484920/149‑1 (MQ=255)                        cgTGAGTCAGTACAAAGGTGATCCGCAAACCAGATAAGTGATTGATAAGGGTAGGCTGGACCACCTGACCGGGCAATTGACCTCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCg                                                                                                                           <  2:320952/149‑1 (MQ=255)                            aTTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGtt                                                                                                                       >  1:215524/1‑149 (MQ=255)                                        gTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTa                                                                                                           >  1:519542/1‑149 (MQ=255)                                                 cAAACCGGAGAGGTTGTTGGTCAGGGTACGCTGGACCACCTGACTGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGAGCTAAAGAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTAGCGATTTTa                                                                                                  <  1:406395/149‑1 (MQ=255)                                                 cAAACCGGAGAAGTGATTGATCAGTGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTa                                                                                                  <  2:487558/149‑1 (MQ=255)                                                 cAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTTGCCGCATTTGGTGAGTTTATTCAGCGAGTTAAGTTCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTa                                                                                                  <  1:206793/149‑1 (MQ=255)                                                  aaacgcgagaTGTGATTGAGCAGGGTACGCTGGACCACCTGACGGGGCACTTCCGCTGGCGGGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAg                                                                                                 <  1:123730/143‑1 (MQ=255)                                                              tgattgatCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAAATAATTCAGCGAATTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTGGGGAGCGTCGATa                                                                                     >  1:449873/1‑149 (MQ=255)                                                                    atCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACa                                                                               >  1:268134/1‑149 (MQ=255)                                                                              gCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATCTTAGTGAGCGTCGATAAAAACCATCTTCAGGa                                                                     >  2:210454/1‑149 (MQ=255)                                                                                  gACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCTAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATaaa                                                                 <  2:160250/149‑1 (MQ=255)                                                                                       gcgcctcGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAAcagca                                                            >  2:469531/7‑149 (MQ=255)                                                                                             cGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCaa                                                      <  1:469531/149‑1 (MQ=255)                                                                                              gggCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGAGTTTAGTGAGCGTCGATAAAACAAATATTCAGGATAAACAGCAGCGCAAc                                                     >  2:26240/1‑149 (MQ=255)                                                                                                        ccGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACg                                           >  2:13940/1‑149 (MQ=255)                                                                                                          gCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCa                                         >  1:412750/1‑149 (MQ=255)                                                                                                                  tgggtgtATTAAGCGTGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTa                                 <  2:188619/143‑1 (MQ=255)                                                                                                                  tGAGTTTATTCAGCGAGTTAATATCCAAATAAAAAACCCGCCAGCAATCATGCCTGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTa                                 <  1:496473/149‑1 (MQ=255)                                                                                                                         aTTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCACCGATGATTACGCACGGGCTTAGATCACg                          <  2:519542/149‑1 (MQ=255)                                                                                                                             aGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGa                      <  2:215524/149‑1 (MQ=255)                                                                                                                              gCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGAc                     >  1:301714/1‑149 (MQ=255)                                                                                                                                        aTCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGAACACGCAGACGTCCGGGAcc           >  2:24554/1‑149 (MQ=255)                                                                                                                                                 aaaaaCCCGCCAGAAATAATGGATGGCGGGTTTTGAACGCGCTAGGGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTtcat  <  2:284997/149‑1 (MQ=255)                                                                                                                                                 |                                                                                                                                                     AACAAGCCGGAATTTATGGGCGGCGTGATTCAGAACAAAGTTGATCCGCAAACCGGAGAAGTGATTGATCAGGGTACGCTGGACCACCTGACCGGGCAATTGACCGCATTTGGTGAGTTTATTCAGCGAGTTAAGATCTAAATAAAAAACCCGCCAGCAATCATGCATGGCGGGTTTTTAACGCGCTATCGATTTTAGTGAGCGTCGATAAAGACAATCTTCAGGATAAACAGCAGCGCAACGATGATTACGCACGGGCTTAGATCACGCAGACGTCCGGTACCGATTTTCAT  >  NC_000913_3_bme_pgi/3895078‑3895370

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.