New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 375218	37 (1.220)	4 (0.140)	4/274	3.8	8.4%	noncoding (289/436 nt)	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences
	?	NC_000913_3_bme_pgi	= 375287	52 (1.800)					noncoding (358/436 nt)	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCC  >  NC_000913_3_bme_pgi/375089‑375362                                                                                                                                  |                                                                                                                                                   tGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCTGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCgg                                                                                                                                 >  2:193055/1‑149 (MQ=25)     aaGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATgc                                                                                                                             <  1:193055/149‑1 (MQ=35)          gcgTTAGCGTCGCATCAGGCCTATGAGCTGATCGGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCCTCTGCCCCCGACTGCCGGATGCGGCGt                                                                                                                        >  2:519550/1‑149 (MQ=11)                gCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGc                                                                                                                  <  1:346514/149‑1 (MQ=38)                               tCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACg                                                                                                 <  1:276758/149‑1 (MQ=39)                                    gcACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCA‑GA‑TGCCTGATGCGACGCTAACGCGTCTTATCAGGCCTAcaaattc                                                                                            >  1:493158/1‑143 (MQ=11)                                           tGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATTGAGCgggc                                                                                     >  1:249037/1‑148 (MQ=255)                                             caggAGGCGGCGTCAGCGCCGTATCCGGCGGACGGGGGGCGGGAGAAGGTGGAGGTCTAATAAGACGCGTTCGGGTCGCGTCAGGCATCTGCGCACGACTGCCGGATGCGGCGGACAGGC‑‑ATTAATCGGGCTACGGATGGGGCgggcaa                                                                                   <  2:46652/147‑4 (MQ=2)                                                  tGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTa                                                                              <  2:176100/149‑1 (MQ=40)                                                    cggcgTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCTGTTTTCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAgg                                                                            >  1:123255/1‑149 (MQ=255)                                                    cggcgTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAgg                                                                            >  1:123250/1‑149 (MQ=255)                                                    cggcgTGAACCCCTTATCCGGCCTACGGGTGGCGGGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAgg                                                                            <  2:70311/149‑1 (MQ=255)                                                         tGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGa                                                                       <  2:307724/149‑1 (MQ=255)                                                              gCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGAtgcga                                                                  <  1:156243/149‑5 (MQ=255)                                                                cTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGa                                                                                                                                        >  1:367148/1‑79 (MQ=255)                                                                cTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGAcg                                                                >  2:434923/1‑149 (MQ=255)                                                                 ttATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTATACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGAcgc                                                               <  1:350648/149‑1 (MQ=255)                                                                 ttATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGAcgc                                                               >  1:364512/1‑149 (MQ=255)                                                                      cGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGGTAg                                                          >  1:448576/1‑149 (MQ=255)                                                                         gctgcGGGT‑GCGCGGGAGTTTGTAGGCCTGATAAGACGGGTGAGCGTCTCATCAGGCAGCTGCGCACGACTGCCGGATGCGGCGGAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTc                                                      <  2:132201/145‑1 (MQ=11)                                                                          caaCGGGTGGCGCGAGAATTTGTGGGCCCGATAAGACGCGTTGGCGTCGCATCGGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTc                                                      <  2:101118/147‑1 (MQ=255)                                                                          cTACGGGTGGCGCGAAAATTTGTAGCCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTATACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTc                                                      <  1:528468/149‑1 (MQ=255)                                                                           tACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGGTAGCGTCg                                                     >  1:463532/1‑149 (MQ=255)                                                                                            tttGTAGGCCGGCGAAGACGCGTTACGGTCGCATCAGCAATACGCGCACGACTGCCGGAGGCGGCCTAAACGC‑‑CTTAGCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGcaca                                    <  2:119441/149‑1 (MQ=11)                                                                                                       gATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGAAAACGC‑‑CTTATGCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATACGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACAGCCGGa                         >  2:141495/1‑149 (MQ=255)                                                                                                        aTAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGAt                        >  1:399795/1‑149 (MQ=35)                                                                                                            gACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTCTCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATCTGACGCGCCAGCGTCCCATCTGGCATCTGCACACGCCTGCCggtggcgc                    >  2:122127/1‑143 (MQ=11)                                                                                                                cgTTAGCGTCGCCTCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATaaa                <  1:202414/149‑1 (MQ=255)                                                                                                                    agggtggcagcaGGGATCTGCGGACGACGGCCGGATGCGGCGTAAGCGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCAGCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTc            <  2:211511/143‑1 (MQ=14)                                                                                                                      cGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCtt          >  2:494191/1‑149 (MQ=255)                                                                                                                        tCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACCCGACTGCCGGATGCGATAAACGTCTTGt        >  1:340216/1‑149 (MQ=255)                                                                                                                        tCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGt        >  2:14699/1‑149 (MQ=255)                                                                                                                        tCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACCACTGCCGGATGCGATAAACGTCTTGt        >  1:340222/1‑149 (MQ=255)                                                                                                                           cATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAACCGTCTTGTCCg     >  2:410375/1‑149 (MQ=255)                                                                                                                           cATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCg     <  2:243577/149‑1 (MQ=255)                                                                                                                             tCAGGCATCTGGGCACGCCTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGc   <  2:123255/149‑1 (MQ=255)                                                                                                                             tCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGc   <  2:123250/149‑1 (MQ=255)                                                                                                                              ccggCATCGGGGCACGCGCGCAGGAGCCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCGGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGcc  <  2:232926/147‑1 (MQ=17)                                                                                                                                  |                                                                                                                                                   TGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTGAACGCCTTATCCGGCCTACGGGTGGCGCGAGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCGCACGACTGCCGGATGCGGCGTAAACGC‑‑CTTATCCGGCCTACGGATGGCGCGGGAATTTGTAGGCCTGATAAGACGCGTTAGCGTCGCATCAGGCATCTGCACACGACTGCCGGATGCGATAAACGTCTTGTCCGGCC  >  NC_000913_3_bme_pgi/375089‑375362

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.