New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi 463838 =30 (0.640)3 (0.070) 3/266 NT 9.3% intergenic (+52/‑99) ppiD/ybaV periplasmic folding chaperone, has an inactive PPIase domain/putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein
?NC_000913_3_bme_pgi 463848 = 29 (0.640)intergenic (+62/‑89) ppiD/ybaV periplasmic folding chaperone, has an inactive PPIase domain/putative competence‑suppressing periplasmic helix‑hairpin‑helix DNA‑binding protein

GCACAAATCGTCTTTGAAGCTCTGATGAGTAACCTGCGTAAAGAGGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTATGAAACACGGAATTAAAGCACTGCTCATTACCCTGTCCCTGGCCT  >  NC_000913_3_bme_pgi/463703‑463982
                                                                                                                                       |                                                                                                                                                
gCACAAATCGTCTTTGAAGCTCTGATGAGTAACCTGCGTAAAGAGGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCt                                                                                                                                     >  2:573904/1‑149 (MQ=255)
 ggccagggacagggtactgagcagtgctttaattccgtgtttcatactgttttctccttgtttgttaacagtggaatcaccttaacggcagtgaaaacagtaaacaaatggcaatgttcagaaatggaaaaggtCGCTTTCGCGGCCtt                                                                                                                                    >  1:453927‑M1/135‑149 (MQ=255)
 cacaAATCGTCTTTGAAGCTCTGATGAGTAACCTGCGTAAAGAGGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCtt                                                                                                                                    <  1:518679/149‑1 (MQ=255)
          tCTTTGAAGCTCTGATGAGTAACCTGCGTAAAGAGGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTc                                                                                                                           >  1:604521/1‑149 (MQ=255)
                  gCTCTGATGAGTAACCTGCGTAAAGAGGCGACAATCAAAATTGGCCATACGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACAtt                                                                                                                   <  1:842453/149‑1 (MQ=255)
                         tgaGTAACCTGCGTAAAGAGGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCAttt                                                                                                            <  1:573904/149‑1 (MQ=255)
                               aCCTGCGTAAAGAGGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATACGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCAATTTCTGAACATTGCCATTTGTTTAc                                                                                                      >  1:831730/1‑149 (MQ=255)
                                  tGCGTAAAGAGGCGAAAAGCAAAATTGGCGAGGCGCTGGAACAGCAATAATCCTGAAGACGCCTGGCAAAATAATGGGTTGCAGCTGTGACAAGAAAAGGGCGCTTTCCGGTCCTTTTCCATTTCTTACCATTGCCTTTTGTTTACTGt                                                                                                   >  2:334236/1‑149 (MQ=255)
                                    cGTAAAGAGACGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGttg                                                                                                 >  2:90243/1‑148 (MQ=255)
                                     cgtaaGAGGCGAAAATCCAACGCTTCGATCCCCTTGAAAAGCAATAATCCTTATTCCGCCTTGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGGCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGtttt                                                                                                <  1:240539/146‑1 (MQ=255)
                                         agagGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACt                                                                                            >  2:801669/1‑149 (MQ=255)
                                          gagGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTg                                                                                           >  1:754497/1‑149 (MQ=255)
                                           agGCGAAAATCAAAATTGGCGATTCGCTGGAACAGTAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAACAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGc                                                                                          <  1:153121/149‑1 (MQ=255)
                                             gCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTGGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTTACTGCCg                                                                                        >  2:286687/1‑149 (MQ=255)
                                              cGAAAATCAAAATTGGCGATGCGCTGGAACAGCCATAATCCTGAAGCCGCCTCGCAACAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGt                                                                                       >  2:739235/1‑149 (MQ=255)
                                                 aaaTCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTCCAGATCAATTCCAGTTGTTTACTGTTTTCACTGCCGTTaa                                                                                    <  1:437647/149‑1 (MQ=255)
                                                  aaTCAGAATGGGCGGTGCGCTGGACCAGGAATAATCCTGAAGCCGTCTCGTAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTTCATTTGTGAACATTGCTATTTGTTTACTGTTTTCACTGCCGTTAAg                                                                                   <  2:52898/149‑1 (MQ=255)
                                                  aaTCAAAAGTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAg                                                                                   <  1:664664/149‑1 (MQ=255)
                                                      ctccttgtttgttaacagtggaatcaccttaacggcagtgaaaacagtaaacaaatggcaatgttcagaaatggaaaaggcCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGttt                                                                                                 <  2:822882‑M1/50‑1 (MQ=255)
                                                      ctccttgtttgttaacagtggaatcaccttaacggcagtgaaaacagtaaacaaatggcaatgttcagaaatggaaaaggcCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGttt                                                                                                 >  1:822882‑M1/82‑131 (MQ=255)
                                                        aaTTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACACGAAAAGGTCGCTTTAGCGGCCTTTTCCATTTCTGAACATTGCCATTTTTTTACTGTTTTCAATGCCGTTAAAGttctt                                                                             >  1:167888/1‑145 (MQ=255)
                                                                 tGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAATAATGCGTTGTAGCTGTATCTAGAATTGGTTGCTTTCGCGGCCTTTTCTATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTa                                                                    <  1:145455/149‑1 (MQ=255)
                                                                   cgcTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGACAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACCTTGCCATTTGTTTACTGTTTTCACTGCCGTAAAGGTGATTCAACTGTTaac                                                                  >  1:77788/1‑149 (MQ=255)
                                                                        gAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTaacaaaca                                                             >  2:499272/1‑149 (MQ=255)
                                                                         taCAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAacaaacaa                                                            <  1:159835/148‑1 (MQ=255)
                                                                                    tCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGATGATTCCACTGTTAACAAACAAGGAGAAAACAg                                                 >  1:508896/1‑149 (MQ=255)
                                                                                       tGAAGCCTCCGCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATCGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTAt                                              <  2:285523/149‑1 (MQ=255)
                                                                                       tGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCAGTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTAt                                              <  1:59742/149‑1 (MQ=255)
                                                                                           gccgccTCGCAAAAAAATGCGTTGCAGCTTTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTATGaaa                                          <  1:329987/149‑1 (MQ=255)
                                                                                                       aaaaaTGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGTAGAAACAAGTATGAAACACGGAATTaaa                              >  2:302337/1‑149 (MQ=255)
                                                                                                          aaTGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTATGAAACACGGAATTAAAGCa                           >  2:452749/1‑149 (MQ=255)
                                                                                                                         tAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTATGAACCACGGAATTACAGCACTGCTCATTACCCTg            >  2:347566/1‑149 (MQ=255)
                                                                                                                               gAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAACCAAGGAGAAAACAGTCTTAAACACGGAATTAAACAACTTCTCATTACTCTGTCCCTg      >  2:814109/1‑149 (MQ=255)
                                                                                                                                   aGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTTTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTATGAAACACGGAATTAAAGCACTGCTCATTACCCTGTCCCTGGCCt  <  2:831730/149‑1 (MQ=255)
                                                                                                                                       |                                                                                                                                                
GCACAAATCGTCTTTGAAGCTCTGATGAGTAACCTGCGTAAAGAGGCGAAAATCAAAATTGGCGATGCGCTGGAACAGCAATAATCCTGAAGCCGCCTCGCAAAAAAATGCGTTGCAGCTGTAACAAGAAAAGGTCGCTTTCGCGGCCTTTTCCATTTCTGAACATTGCCATTTGTTTACTGTTTTCACTGCCGTTAAGGTGATTCCACTGTTAACAAACAAGGAGAAAACAGTATGAAACACGGAATTAAAGCACTGCTCATTACCCTGTCCCTGGCCT  >  NC_000913_3_bme_pgi/463703‑463982

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.