| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| JC | NC_000913_3_bme_pgi | 3,815,859 | Δ82 bp | 67.5% | [rph]–[rph] | [rph], [rph] | |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 3815858 | 10 (0.210) | 21 (0.490) | 20/252 | NT | 67.5% | pseudogene (24/48 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH |
| ? | NC_000913_3_bme_pgi | 3815941 = | 11 (0.250) | pseudogene (609/669 nt) | rph | ribonuclease PH (defective);enzyme; Degradation of RNA; RNase PH | |||||
AACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGC > NC_000913_3_bme_pgi/3815710‑3816003 | aaCTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGC < 1:92139‑M1/149‑1 (MQ=255) ttgctAAGCGCAAATTCAATAGACTGGCTGTGATATGGTTTCATGCGTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGGGACTCATCAGTCGCCTTAAAAATCAGTTTTCCAGCGCCGCCTTCTGCGTCGCTACAATGgat < 2:344560/149‑1 (MQ=255) gctAAGCCTAAATTCAATAAACTGGCGCTGATATGTTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaa < 2:430567‑M1/149‑18 (MQ=255) taggcgcAAATGCCATGAACTGGCGCTGATATGTTGTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGGCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcga < 2:110018/146‑1 (MQ=255) tAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatg > 1:738960‑M1/1‑130 (MQ=255) tAAGCGCAAATTAAATAAACTGGCGCTGATCTGGTGTTTTGCGTGCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGgattcga < 2:493586/149‑1 (MQ=255) aaGCGCAAATTTATTAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatga < 1:350297‑M1/149‑21 (MQ=255) gggcaaATTCACTACACTGTCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTTTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCTCCTTCTGCcgtcccctgcacttcaatgatg < 2:362881‑M1/147‑23 (MQ=255) cAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgc < 2:738960‑M1/149‑26 (MQ=255) aaaTTCAATAAACGGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTATAAAAACAAAAAAAAGGCGACTCATCAGTCGACTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcc < 1:367025‑M1/149‑27 (MQ=255) tAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAACAAAGGCCACTCCTCAGTCGCATTAAAAATCAATTTGCCAGCGCCGCCATCTGCcctcccccacacttccatgatgcccccctctcac > 2:154316‑M1/1‑115 (MQ=255) aaCTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGATAAAAAAAAGGCGACGCATCAGTCGCCTTAAAAATAAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggg < 2:679901‑M1/149‑37 (MQ=255) cTGATAGGGTTTCATGCCTTCGGTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcacta < 2:691020‑M1/149‑45 (MQ=255) tGGTTTCATGCATTCGCTCCTCATCTTACTGTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcgttcatcactccgttca > 2:31756‑M1/1‑99 (MQ=255) ggTTTCAGGCCTTCGCTCCTGATCTTATTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTATAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTa < 2:132549/149‑1 (MQ=255) tttCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgt > 2:483277‑M1/1‑96 (MQ=255) aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaat > 1:726200‑M1/1‑92 (MQ=255) aTGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaat < 2:726200‑M1/110‑19 (MQ=255) cTTCGCTCCTCATCTTATTTTTCTAAATACAAAAAAAA‑GCGACTCATCATTCGCCTTAAAAATCAGTTTGCTAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATgg < 1:269133/149‑1 (MQ=255) gCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcgg < 2:110289‑M1/149‑66 (MQ=255) cttatctTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTCCCACGCAGTGCGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcaga < 1:882902‑M1/146‑70 (MQ=255) ctcATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcctcactacgttcatgtcggtctctgcggcaga > 2:365885‑M1/1‑80 (MQ=255) aTCTTACTTTTTTACAGACAAAAAAAAGGCGACTCATCAGTCGCTTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtc < 1:374474‑M1/149‑73 (MQ=255) aGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGACAGCGCCGCCTTCTCAGTTGCTACAATGGATACGGTCCCCCTCGGGCCAGAGCCAAAAAAATGAGTATCTCTCCATCGGTAAACGAATCGCCTTCTACCTTcc > 1:662050/1‑149 (MQ=255) gACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTccc > 1:225886/1‑149 (MQ=255) aaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgt > 1:479162‑M1/1‑54 (MQ=255) aaaaGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgt < 2:479162‑M1/57‑4 (MQ=255) cGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgctt < 1:900629‑M1/149‑102 (MQ=255) tcatcaGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgatctctacgccagagacttcaacgtattccagatcgcaaaccgcttcgcc > 1:697853‑M1/1‑44 (MQ=255) cTTAAAATGCAGTTTGCCAGCGCCCCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcgggctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattc < 2:594543‑M1/149‑117 (MQ=255) aGTTTGCCAGCGCCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattacagatcgcaaaccgcttcgccgttcacaattccgacagaaac > 1:549649‑M1/1‑23 (MQ=255) aGTTTGCCAGCGCCGCCTTCTGCGTCGCGACAATGGATTCTATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTa < 2:708013/149‑1 (MQ=255) tttGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACg > 1:33856/1‑149 (MQ=255) agggccgccTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATg < 2:432081/146‑1 (MQ=255) gcgcCGCCTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctgcggcagagtcttcaacgtattccagatcgcaaaccgcttcgccgttcacaattccgaccaaaactgcggctac > 2:533539‑M1/1‑14 (MQ=255) cgccTTCTGCcgtcccctgcacttcaatgatgcgcccgtcttcggtcatcactacgttcatgtcggtctctccggcagaatctttactgtaagccagatcgcaaaccgcttcgccgttcacaattccgacagaaactgcggctaccatc > 1:659310‑M1/1‑10 (MQ=255) cTGCGTCGCTACAATGGATTCGATTCCCCTCGTGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGc < 1:60459/149‑1 (MQ=255) | AACTTTAACACCTGCTTGCTAAGCGCAAATTCAATAAACTGGCGCTGATATGGTTTCATGCCTTCGCTCCTCATCTTACTTTTCTACAGACAAAAAAAAGGCGACTCATCAGTCGCCTTAAAAATCAGTTTGCCAGCGCCGCCTTCTGCGTCGCTACAATGGATTCGATTCCCCTCGGGCCAGAGCCAACAAGATGAGTAGCTCTTCATGGGTGAACGGCTCGCCTTCTGCCGTCCCCTGCACTTCAATGATGCGCCCGTCTTCGGTCATCACTACGTTCATGTCGGTCTCTGC > NC_000913_3_bme_pgi/3815710‑3816003 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |