| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913_3_bme_pgi | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913_3_bme_pgi | 257908–258674 | 258683 | 10–776 | 33 [0] | [1] 34 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 257907 | 0 (0.000) | 31 (1.050) | 29/272 | 0.1 | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913_3_bme_pgi | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
CGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCT > NC_000913_3_bme_pgi/257760‑258050 | ctcttGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa < 1:369659‑M1/147‑2 (MQ=255)ctcttGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTAACGAGTATACACCCGAAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAa < 2:441009‑M1/147‑2 (MQ=255) aTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGGGGACACCCGAAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagatagtc > 2:422149‑M1/1‑134 (MQ=255) ttGGTAAATGTCGCCAATTTGGTAACACACGTGCATCACACCAGGAGATAGCAATGACGTTACCGAGTGGTCACCCGAAGAGCAGACTGATCAA‑AAAATTTACCGCCCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcga < 1:34018‑M1/149‑18 (MQ=255) ttGCTAAATTTGGCCAATTTGGTAAAACAGTTGCATCACTACAGGAGATAGCAATGACGTTACCGAGTGGCTAACCGAAGAGCAGATTGAGCAA‑TTAATTTACCGCACTAGTCCCGTATATTCGTGAAGGTAagtgcaaagataatcga < 2:108550‑M1/149‑18 (MQ=255) tAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattct < 1:208914‑M1/149‑22 (MQ=255) tAAATTTTGCCAATTTGGTAAAACAGTCGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATAAA‑AAAATTTACAGCACTAGGCCCGTAAATTCGTGAAGGAAagtgcaaagataatcgagtct > 1:249149‑M1/1‑128 (MQ=255) aaaTTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagacaatcgattctt < 1:334829‑M1/149‑23 (MQ=255) ttttCCAAATTGGTAAAACAGGTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACATCCGAAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGACCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc < 1:69525‑M1/149‑27 (MQ=255) cAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattg > 1:339998‑M1/1‑118 (MQ=255) tttGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGGAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaacaataatcgattctttttggattgtct > 2:311837‑M1/1‑115 (MQ=255) tCAGAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgt < 2:334598‑M1/149‑53 (MQ=255) acaGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaac > 2:12392‑M1/1‑92 (MQ=255) aGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccg < 2:365425‑M1/149‑60 (MQ=255) gACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAATAACTTTTATCACTCTA‑TCTCGTATATTCGTGAAGGTAagttcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgc < 1:240938‑M1/149‑73 (MQ=255) gTTACCGAGTGGACACCCGAAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattgtttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtg > 1:190889‑M1/1‑74 (MQ=255) aGTGGACACCCGAAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccgacaccggaagttcgtgaattctg > 2:28828‑M1/1‑67 (MQ=255) gACACCCGAAGAGCACATTGATCAA‑AAAGTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcatagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggc > 2:447998‑M1/1‑63 (MQ=255) gAAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcgatgtgaaaccggcaccggaagtgcgtgaattctggggctggtgga < 2:363331‑M1/149‑94 (MQ=255) aGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct > 2:64095‑M1/1‑49 (MQ=255) ttGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggggctgga > 1:306975‑M1/1‑46 (MQ=255) tCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagcgagaagcg > 2:32701‑M1/1‑42 (MQ=255) aa‑aaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca > 2:137950‑M1/1‑40 (MQ=255) ccGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattccttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt < 1:15174‑M1/149‑120 (MQ=255) ccGAACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggaggtggaagcgcaggaatcccgt > 2:6014‑M1/1‑30 (MQ=255) gCACTAGGCCCCTATTTTCGTGAAGGTAagtgcaaagatactcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgttaattctggggctggtggatggagctggaagcgcaggaatcccgttt < 1:317324‑M1/149‑122 (MQ=255) aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatccc < 1:317794‑M1/143‑118 (MQ=255) aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatccc > 2:317794‑M1/1‑26 (MQ=255) cTAGGCCCGTATAATCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac < 1:51385‑M1/149‑125 (MQ=255) tatTCGGGAAGGTAagtgcaaagataatcgattctttttcgattgtctgtctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacc < 2:96125‑M1/149‑136 (MQ=255) cGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctgatggatggagctggaagcgcaggactcccgttttacctacagttaccagtt < 1:447998‑M1/149‑140 (MQ=255) aaGGTAagtgggaagataatcgatgcgttttggattggctgggtgtaggcgtcaacgtggaaccggcaccggaagtgcgtgaattctggggctggtggatggcgctggaagcgcaggaatcccgttttacctacagttaccagtttggt < 2:117041‑M1/149‑144 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggt < 1:293381‑M1/149‑144 (MQ=255) | CGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAA‑AAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCT > NC_000913_3_bme_pgi/257760‑258050 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |