New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	375132 =	53 (1.690)	4 (0.130)	4/274	3.9	7.4%	noncoding (203/436 nt)	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences	REP31 (repetitive extragenic palindromic) element; contains 9 REP sequences
	?	NC_000913_3_bme_pgi	= 3512570	NA (NA)					noncoding (60/90 nt)	REP250 (repetitive extragenic palindromic) element; contains 2 REP sequences	REP250 (repetitive extragenic palindromic) element; contains 2 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

ACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCAT  >  NC_000913_3_bme_pgi/3512433‑3512716                                                                                                                                          |                                                                                                                                                     acaTTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAg                                                                                                                                                      >  2:73854/1‑138 (MQ=255) acaTTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAg                                                                                                                                                      <  1:73854/138‑1 (MQ=255)  caTTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCGTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGc                                                                                                                                          <  1:123526/149‑1 (MQ=255)           tgATTATTGCAAATTAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCAcgcc                                                                                                                                 <  2:189359/148‑1 (MQ=255)                attGTAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTGAGAGTGATGATAACAGCAAAATTGCCTGATTCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATc                                                                                                                            <  1:181308/149‑1 (MQ=255)                     aaaTGAACATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTTATGAAAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCa                                                                                                                       <  2:195320/149‑1 (MQ=255)                         tgagtataaaaaaCCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAGTTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGaa                                                                                                                   <  2:516632/142‑1 (MQ=255)                                 aaaaaCCGGGTTCCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAgcgc                                                                                                           <  1:277700/149‑1 (MQ=255)                                                        agagTGATGATAAAAGCAAAATTTCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTGCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTa                                                                                   <  2:86553/149‑1 (MQ=255)                                                          agTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACg                                                                                 >  2:227056/1‑149 (MQ=255)                                                                  tAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGcc                                                                         >  2:348030/1‑149 (MQ=255)                                                                   aaaaGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCca                                                                        >  2:174353/1‑149 (MQ=255)                                                                      aGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCcacca                                                                     >  1:245668/1‑147 (MQ=255)                                                                             ttGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAAt                                                             <  1:441955/149‑1 (MQ=255)                                                                                         cTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCACATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTacac                                                 >  1:134012/1‑149 (MQ=255)                                                                                          tgcGCTTATCAGGCCTACGCTTGCTTGCAATATGTGCATTACTTCGTAGGCCGGATCAGGCGTTGACGGCGGATCCGGCATGAGGAAAGCGCAATTTGCTAGCAAG‑AGTGAATTACAGCTTCGACACATAGACCAA‑CGCTTCTTGCAcc                                                >  2:47201/3‑149 (MQ=255)                                                                                          tACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACAcc                                                >  1:499134/1‑149 (MQ=255)                                                                                          gaCGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCTCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACAcc                                                <  1:135786/148‑1 (MQ=255)                                                                                              cTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCtt                                            >  1:57946/1‑149 (MQ=255)                                                                                                  tCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCGTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTAg                                        >  1:136044/1‑149 (MQ=255)                                                                                                  tCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGAATACGGCGGTCACGCCGCATCCGGCATAGACAAATCGCAATTTG‑CAGAGATGTTTTAATTACGGTTTCGCCACA‑AACACGATCACTTCGTAGACCGTttttcc                                        >  1:376879/1‑147 (MQ=255)                                                                                                   cAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTAGc                                       <  2:499134/149‑1 (MQ=255)                                                                                                    aGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGACTTCGCCACA‑CAACCAATCGCTTCGTCCACCGCttttcgag                                      >  2:219350/1‑145 (MQ=255)                                                                                                         tACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTAGCGTACgg                                 <  1:409310/149‑1 (MQ=255)                                                                                                         tACATTTCCTGGCAATATGTGCATTACTTTGGAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTAGCGTACgg                                 <  1:409471/149‑1 (MQ=255)                                                                                                          aCATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGATTTTAGCGTACggg                                >  2:536135/1‑149 (MQ=255)                                                                                                            aTTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCCCCCCA‑AAACCAATCGCTTCGTACAACGCTTTTCGCGTACGGGaa                              >  2:421989/1‑149 (MQ=255)                                                                                                                  ttGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCAGCCAGCATGCGCTCTCCTCTATTTGCCAGCAAT‑AGTGAATTACGGCGTCGCAACA‑CAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTgc                        <  1:536135/149‑1 (MQ=37)                                                                                                                        tatGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTg                  <  1:226856/149‑1 (MQ=255)                                                                                                                        tatGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTg                  <  2:161979/149‑1 (MQ=255)                                                                                                                           gtgCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCt               <  1:348030/149‑1 (MQ=255)                                                                                                                              cATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCtttt            >  1:429790/1‑149 (MQ=255)                                                                                                                                ttACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTc          >  2:518454/1‑149 (MQ=255)                                                                                                                                   cTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCcgc       <  1:227056/149‑1 (MQ=255)                                                                                                                                    tttGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCcgcg      >  1:220127/1‑149 (MQ=255)                                                                                                                                     ttGTAGGTCGGATAAGGCGTTCACGCGGCTTCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCacgc     <  2:28289/149‑1 (MQ=255)                                                                                                                                       gTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTCGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCa   >  1:117986/1‑149 (MQ=255)                                                                                                                                        tAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCAt  >  1:458159/1‑149 (MQ=255)                                                                                                                                          |                                                                                                                                                     ACATTTTTTCGGATTATTGCAAATGAGGATAAAAAAACCGGGTTTCCCCGGTTTCAGAGTGATGATAAAAGCAAAATTGCCTGATGCGCTACGCTTATCAGGCCTACATTTCCTTGCAATATGTGCATTACTTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCATGAACAAAGCGCAATTTGCCAGCAAT‑AGTGAATTACGGCTTCGCCACA‑AAACCAATCGCTTCGTACACCGCTTTTAGCGTACGGGAAGCGTGCGCGCTGGCTTTTTCCGCGCCAT  >  NC_000913_3_bme_pgi/3512433‑3512716

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.