New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 551487	NA (NA)	4 (0.130)	4/274	3.9	8.0%	noncoding (134/157 nt)	REP52 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP52 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_bme_pgi	2316890 =	46 (1.540)					noncoding (57/197 nt)	RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site	RIP162 (repetitive extragenic palindromic) element; contains 5 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GGGTGTCGAGAACGATATCGCCCTGCTGAATTATCTCTCTTCAGTGACCTTAAGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTAC  >  NC_000913_3_bme_pgi/2316755‑2317030                                                                                                                                        |                                                                                                                                             gggTGTCGAGAACGATATCGCCCTGCTGAATTATCTCTCTTCAGTGACCTTAAGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGcc                                                                                                                                 >  2:498366/1‑149 (MQ=255) gggTGTCGAGAACGATATCGCCCTGCTGAATTATCTCTCTTCAGTGACCTTAAGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGcc                                                                                                                                 <  1:498366/149‑1 (MQ=255)   gtgtCGAGAACGATATCGCCCTGCTGAATTATCTCTCTTCAGTGACCTTAAGTCCGGCAGATGAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTCGTGTCTTATCTGGCATTTGTACCGATTGCCGGATGTGGCGTAAACGCCtt                                                                                                                               >  2:12502/1‑149 (MQ=255)      tCGAGAACGATATCGCCCTGCTGAATTATCTCTCTTCAGTGACCTTAAGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATc                                                                                                                            >  1:180348/1‑149 (MQ=255)           aaCGATATCGCCCTGCTGAACTATCTCTCTTCAGTGACCTTAAGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGcc                                                                                                                       <  2:122684/149‑1 (MQ=255)             ccatatCGCCCTGCTGAATTTTCTCTCTTGATTGTCCTTAAGTCCTGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTa                                                                                                                     <  1:434728/147‑1 (MQ=37)              gATATCGCCCTGCTGAATTATCTCGCTTCAGTGACCTTAAGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATTTGGCATTTGCACCGATTGCCGGGTGCGGCGTAAACGCCTTATCCGGCCTAc                                                                                                                    >  1:473283/1‑149 (MQ=255)                tatCGCCCTGCTGAATTATCTCTCTTCAGTGACCTTAAGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGCTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGa                                                                                                                  <  1:522098/149‑1 (MQ=255)                            gAATTATCTCTCTTCAGTGACCTTAAGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTAttt                                                                                                      <  2:65952/149‑1 (MQ=255)                               ttATCTCTCTTCAGTGACCTTAAGTCCGGCAGCTGCCTTTGAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTcaa                                                                                                   >  1:404818/1‑149 (MQ=25)                                   ctctctTCAGTGACCTTAAGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACaaa                                                                                               <  2:349993/149‑1 (MQ=255)                                   cgctctTCAGTGACCTTAAGTGCGGCAGATAAAGACTAATCTCCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACaaa                                                                                               <  2:349734/147‑1 (MQ=255)                                    tctctTCAGTGACCTTAAGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTcaactact                                                                                              <  1:110226/149‑5 (MQ=255)                                      tctTCAGTGACCTTAAGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTa                                                                                            >  2:277569/1‑149 (MQ=255)                                      tctTCAGTGACCTTAAGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTa                                                                                            <  2:382167/149‑1 (MQ=255)                                       ctTCAGTGACCTTAAGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTAc                                                                                           <  2:50838/149‑1 (MQ=255)                                                 ctaaaGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACTCGTGAGTGTCTTATCTGGCATGTGCACCGATTGCCGGATGCGGCGTAAACGCCTGATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAg                                                                                 <  2:346069/146‑1 (MQ=37)                                                  ttAAGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAgg                                                                                <  2:354952/149‑1 (MQ=255)                                                          ggCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGCTAGTGACTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATaa                                                                        >  1:431551/1‑149 (MQ=255)                                                           gCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAg                                                                       >  1:63870/1‑149 (MQ=255)                                                            cAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGa                                                                      <  1:385568/149‑1 (MQ=255)                                                               aTAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGAcgc                                                                   <  1:298740/149‑1 (MQ=255)                                                                                 tAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGc                                                 <  1:464981/149‑1 (MQ=255)                                                                                  aGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCa                                                <  2:501792/149‑1 (MQ=255)                                                                                             gACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGaa                                     <  2:213590/149‑1 (MQ=255)                                                                                                  gTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGcct                                >  2:99312/1‑148 (MQ=255)                                                                                                  gTTAGTGGCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCg                                <  1:527473/149‑1 (MQ=255)                                                                                                     aggggcTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGTCTTTTCCGGCTTACGATTCCCATTATTTCAGCAAATTACGTTAAAGTAGGACAGATATGACGCTTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGAt                             <  2:431551/144‑1 (MQ=255)                                                                                                        gtCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAgg                                                                                <  1:377389/95‑1 (MQ=255)                                                                                                        gtCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAgg                                                                                >  2:377389/1‑95 (MQ=255)                                                                                                         tCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATgcgg                         >  2:353001/1‑149 (MQ=255)                                                                                                          cTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATgcggc                        <  2:63870/149‑1 (MQ=255)                                                                                                              tCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTaa                    >  2:258109/1‑149 (MQ=255)                                                                                                                ttccATTTGCACCGATTGCCGGAGGCTGCGTACACACCTTATCCGTCCTACTATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCCTCGCACCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAAc                  <  2:439052/146‑1 (MQ=37)                                                                                                                tGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGaa                                     >  1:88883/1‑130 (MQ=255)                                                                                                                tGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGaa                                     <  2:88883/130‑1 (MQ=255)                                                                                                                  gCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGc                <  1:219099/149‑1 (MQ=255)                                                                                                                  gCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCAAGATAAGCAGCGTCAGGGTTCAACCGGTCATTTGCACTGAATGCTGGATGAGGCCTATACGc                >  2:330372/1‑149 (MQ=25)                                                                                                                    tgttGCACCGACTGCCGGATGCGGCGTAAACCCCTTATCCGGCCTACTATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCt              <  1:544604/147‑1 (MQ=255)                                                                                                                    aTTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCt              <  1:353001/149‑1 (MQ=255)                                                                                                                    aTTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCt              >  1:350790/1‑149 (MQ=255)                                                                                                                       tGCACCGATTGCCGGATGCGGCGTAAACGCCGTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTAt           <  1:8224/149‑1 (MQ=255)                                                                                                                         cACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATcc         <  1:92969/149‑1 (MQ=255)                                                                                                                         cACCGATCGACGGATGCGGCGTAAACGCCTTATCCGGACTACGGTTCCCATTATTGCAACAGATGACAGTAACGTAAGCCAGATACAACCAGTCAGCGTCGTATTTGGCCTTTGCACTAAATACCGCATGGGGCGCAAAAGCCTtctct         >  2:303353/1‑148 (MQ=16)                                                                                                                          agcGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAGTTACATTAAAGTAGGCCAGATAAGACGGGTCAGCGTCGCATCTGTGATTTGGATTGACTGCCGGATGCGGCGTAAACGGCTTATCCg        >  2:417634/3‑149 (MQ=38)                                                                                                                             gATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACTTTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCAACTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTcc     <  2:473283/149‑1 (MQ=255)                                                                                                                                ggCCGGCTGCGGCTTAACCGCCTGATCCGGCTGAGATTTCCCATTTTTTCAACATATTACATGAAAGTAGGCCAGATAATACTCGTTATCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCTTAAACGCCTTATCCGTCCTAc  <  2:218949/148‑1 (MQ=25)                                                                                                                                ggCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTTGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTAc  <  1:106533/148‑1 (MQ=255)                                                                                                                                        |                                                                                                                                             GGGTGTCGAGAACGATATCGCCCTGCTGAATTATCTCTCTTCAGTGACCTTAAGTCCGGCAGATAAAGACTAATCACCTGTAGGCCAGATAAGACGCGTTAGTGTCTTATCTGGCATTTGCACCGATTGCCGGATGCGGCGTAAACGCCTTATCCGGCCTACGATTCCCATTATTTCAACAAATTACATTAAAGTAGGCCAGATAAGACGCGTCAGCGTCGCATCTGGCATTTGCACTGAATGCCGGATGCGGCGTAAACGCCTTATCCGTCCTAC  >  NC_000913_3_bme_pgi/2316755‑2317030

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.