| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 1486996 | 135 (1.500) | 6 (0.070) | 6/274 | 9.3 | 4.5% | intergenic (+33/‑239) | hrpA/ydcF | putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding |
| ? | NC_000913_3_bme_pgi | = 1487009 | 128 (1.540) | intergenic (+46/‑226) | hrpA/ydcF | putative ATP‑dependent helicase/DUF218 superfamily protein, SAM‑binding | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GTGAAAGAGATCCGTTGGATGATAGAAGAGTTGCGCGTTAGTTACTTCGCTCAACAACTTGGTACGCCTTATCCGATTTCAGATAAGCGTATTTTGCAGGCGATGGAGCAGATTAGCGGTTAACCCTGCTATTTGCCTGATAAAGAAAAAACCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/1486841‑1486996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaacccggCGCTAAATGCTTACCGGGTTTTTTCTTTATCAGGCAAATAGCAGGGTTAACCGCTAATCTGCTCCATCGCCTGCAAAATACGCTTATCTGAAATCGGATAAGGCGTACCAAGTTGTTGAGCGAAGTAACTAACGCGCAACTCTTC < NC_000913_3_bme_pgi/1487009‑1486865 GTGAAAGAGATCCGATGGATGATAGAAGAGTTGCGCGTTAGTTACTTCGCTCACCAACTTGGTACGCCTTATCCGATTTCAGATAAGCGTATTTTGCAGGCGATGGAGCAGATTAGCGGTTAACCCTGCTATTTGCCTGATAAAGAAAA > 2:117894/1‑149 GAAAGAGATCCGTTGGATGATAGAAGAGTTGCGCGTTAGTTACTTCGCTCAACAACTTGGTACGCCTTATCCGATTTCAGATAAGCGTATTTTGCAGGCGATGGAGCAGATTAGCGGTTAACCCTGCTATTTGCCTGATAAAGAAAAAA > 1:495271/1‑149 AAAGAGCTCCGTTGGATGATAGAAGAGTTGCGCGTTAGTTACTTCGCTCAACAACTTGGTACGCCTTATCCGATTTCAGATAAGCGTATTTTGCAGGCGATGGAGCAGAGTAGCGGGTAACCCTGCTATTGGCCTGATAAAGAAAAAAC > 1:298951/1‑149 tAGATCCGTTGGATGATAGAAGAGATGCGCGTTAGTTACTTCGCTCAACAACTTCGTACGCCTTATCCGAATTCAGATAAGCCTATTTTGCAGGCGATGGCGCAGATTAGCGGTTAACCCTGCTATTTGCCTGATAAAGAAAAAACCCG < 2:265035/148‑1 GAGATCCGTTGGATGATAGAAGAGTTGCGCGTTAGTTACTTCGCTCAACAACTTGGTACGCCTTATCCGATTTCAGATAAGCGTATTTTGCAGGCGATGGAGCAGATTAGCGGTTAACCCTGCTATTTGCCTGATAAAGAAAAAACCCG < 1:642339/149‑1 AAGAGTTGCGCGTTAGTTACTTCGCTCAACAACTTGGTACGCCTTATCCGATTTCAGATAAGCGTATTTTGCAGGCGATGGAGCAGATTAGCGGGTAACCCTGCTATTTGCCTGATAAAGAAAAAACCCGGCGCTAAATGCTTACCGGG < 2:734024/149‑1 GCGCGTTAGTTACTTCGCTCAACAACTTGGTACGCCTAATCCGATATCAGATAACCGTATTTTGCAGGCGATGGAGCAGATTAGCGGTTAACCCTGCTATTTGCCTGATAAAGAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTC < 2:768877/149‑1 CGCGTTAGTTACTTCGCTCAACAACTTGGTACGCCTTATCCGATTTCAGATAAGCGTATTTTGCAGGCGATGGAGCAGATTAGCGGTTAACCCTGCTATTTGCCTGATAAAGAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTCT < 2:648086/149‑1 tGTACGACTTATACGATTTAAGATAAGCGTATTTTGCAGGCGATGGAGCAGATTAGCGGTTAACCATGCTATTTGCATGATAAAGAAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTCTTTATCAGGCAAATAGCAGGGTTAACCG < 2:248443/148‑1 GGCGATGGAGCAGATTAGCGGTTAACCCTGCTATTTGCCTGATAAAGAAAAAACCCGGCGCTAAATGCTTACCGGGTTTT > 1:688478/1‑80 GGCGATGGAGCAGATTAGCGGTTAACCCTGCTATTTGCCTGATAAAGAAAAAACCCGGCGCTAAATGCTTACCGGGTTTT < 2:688478/80‑1 AAAAAACCCGGCGCTAAATGCTTACCGGGTTTTTTCTTTATCAGGCTAATAGCAGGGTTAACCGCTAATCTGCTCCATCGCCTGCAAAATACGCTTATCTGAAATCGGATAAGGCGTACCAAGTTGTTGAGCGAAGTAACTAACGCGCA > 2:492369/1‑149 AAAACCCGGCGCTAAATGCGTACCGGGTTTTTTCTTTATCAGGCAAATAGCAGGGTTAACCGCTAATCTGCTCCATCGCCTGCAAAATACGCTTATCTGAAATCGGATAAGGCGTACCAAGTTGTTGAGCGAAGTAACTAACGCGCAAC > 2:784931/1‑149 AAACCCGGCGCTAAATGCTTACCGGGTTTTTTCTTTATCAGGCAAATAGCAGGGTTAACCGCTAATCTGCTCCATCGCCTGCAAAATACGCTTATCTGAAATCGGATAAGGCGTACCAAGTTGTTGAGCGAAGTAACTAACGCGCAACT < 2:1197564/149‑1 AACCCGGCGCTAAATGCTTACCGGGTTTTTTCTTTATCAGGCAAATAGCAGGGTTAACCGCTAATCTGCTCCATCGCCTGCAAAATACGCTTATCTGAAATCGGATAAGGCGTACCAAGTTGTTGAGCGAAGTAACTAACGCGCAACTC > 1:580968/1‑149 ACCCGGCGCTAAATGCTTACCGGGTTTTTTCTTTATCAGGCAAATAGCAGGGTTAACCGCTAATCTGCTCCATCGCCTGCAAAATACGCTTATCTGAACTCGGATAAGGCGTACCAAGTTGTTGAGCGAAGTAACTAACGCGCAACTCT > 2:501926/1‑149 CCGGCGCTAAATGCTTACCGGGTTTATTCTTTATCAGGCAAATAGCAGGGTTAACCGCTAATCTGCTCCATCGCCTGCAAAATACGCTTAGCTGAACTCGGATAAGGCGTACCAAGTTGTTGAGCGAAGTAACTAACGCGCAACTCTTC < 2:687560/149‑1 CCGGCGCTAAATGCATACCGGGTTTTTTCTATATCAGGCAAATAGCAGGGTTAACCGCTAATCTGCTCCATCGCCTGCAAAATACGCTTATCTGAAATCGGATAAGGCGTACCAAGTTGTTGAGCGAAGTAACTAACGCGCAACTCTTC < 2:348664/149‑1 GTGAAAGAGATCCGTTGGATGATAGAAGAGTTGCGCGTTAGTTACTTCGCTCAACAACTTGGTACGCCTTATCCGATTTCAGATAAGCGTATTTTGCAGGCGATGGAGCAGATTAGCGGTTAACCCTGCTATTTGCCTGATAAAGAAAAAACCCGG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > NC_000913_3_bme_pgi/1486841‑1486996‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aaaaaacccggCGCTAAATGCTTACCGGGTTTTTTCTTTATCAGGCAAATAGCAGGGTTAACCGCTAATCTGCTCCATCGCCTGCAAAATACGCTTATCTGAAATCGGATAAGGCGTACCAAGTTGTTGAGCGAAGTAACTAACGCGCAACTCTTC < NC_000913_3_bme_pgi/1487009‑1486865 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |