| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 4226588 = | 554 (14.960) | 20 (0.540) | 19/242 | 1.1 | 3.6% | coding (2761/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| ? | NC_000913_3_bme_pgi | 4226623 = | 521 (14.180) | coding (2796/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
GCCCACCACTTCATCTTCCAGAATGCGCGGATACTTCCCGGCCAGCGACCAGGTCATAAAGAACGGTGTCCAGTCGATGTAATTACGCAGCGTTTCGATGCTGGCTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_bme_pgi/4226737‑4226588‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGTTGAGGCGCAGCGGCT > NC_000913_3_bme_pgi/4226623‑4226754 GCCCACCACTTCATCTTCCAGAATGCGCGGATACTTCCCGGCCAGCGACCAGGTCATAACGCACAGTGTCCAGTCGATGTAATTACGCAGCGTTTCGATGCTGGCTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTA > 1:466169/1‑150GCCCACCACTTCATCTTCCAGAATGCGCGGATACTTCCCGGCCAGCGACCAGGTCATAAAGAACGGTGTCCAGTCGATGTAATTACGCAGCGTTTCGATGCTGGCTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTA < 3:134022/150‑1GCCCACCACTTCATCTTCCAGAATGCGCGGATACTTCCCGGCCAGCGACCAGGTCATAAAGAACGGTGTCCAGTCGATGTAATTACGCAGCGTTTCGATGCTGGCTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTA > 4:37800/1‑150GCCCACCACTTCATCTTCCAGAATGCGCGGATACTTCCCGGCCAGCGACCAGGTCATAAAGAACGGTGTCCAGTCGATGTAATTACGCAGCGTTTCGATGCTGGCTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTA < 2:157890/150‑1 GCCAGCGACCAGGTCATAAAGAACGGTGTCCAGTCGATGTAATTACGCAGCGTTTCGATGCTGGCTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATC > 4:3123/1‑150 CCAGCGACCAGGTCATAAAGAACGGTGTCCAGTCGATGTAATTACGCAGCGTTTCGATGCTGGCTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCG < 3:3123/150‑1 TCCAGTCGATGTAATTACGCAGCGTTTCGATGCTGGCTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTAGGAAG < 1:67143/87‑1 TCCAGTCGATGTAATTACGCAGCGTTTCGATGCTGGCTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTAGGAAG > 2:67143/1‑87 CAGTCGATGTAATTACGCAGCGTTTCGATGCTGGCTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGGGGCGTGTAGGTAGTCTAAGCCAGCATCGGAACGCTGCGTAGTTACATCGACTGGACACCGTTCTTTATGACCTGGTCG > 1:285870/1‑150 CAGTCGATGTAATTACGCAGCGTTTCGATGCTGGCTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTAGGAAGTCGAAGCCA > 2:208646/1‑94 CAGTCGATGTAATTACGCAGCGTTTCGATGCTGGCTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTAGGAAGTCGAAGCCA < 1:208646/94‑1 TCGATGTAATTACGCAGCGTTTCGATGCTGGCTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTAGGAAGTCGAAGCCAGCATCGAA > 3:30318/1‑99 TCGATGTAATTACGCAGCGTTTCGATGCTGGCTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTAGGAAGTCGAAGCCAGCATCGAA < 4:30318/99‑1 CTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTA < 1:424081/105‑1 CTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTA > 2:424081/1‑105 TTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGA > 2:313444/1‑150 TTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTAGGAA < 4:272228/43‑1 TTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTAGGAA > 3:272228/1‑43 TCCTGCACGCCGAGCCGGTGCGCCACCGGCGGCGTGTAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGAAACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTG < 2:285870/150‑1 CTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAAT > 3:126934/1‑70 CTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAAT < 4:126934/70‑1 CCGAGACGGTGCGCCACCGGCGGCGTGTAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGTTGAG < 1:313444/150‑1 GTGTAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGTTGAGGCGCAGCGGCT < 3:113406/137‑1 GTGTAGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGTTGAGGCGCAGCGGCT > 4:113406/1‑137 AGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGTTGAGGCGCAGCGGCT < 2:187101/133‑1 AGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGTTGAGGCGCAGCGGCT > 1:187101/1‑133 AGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGC > 1:112342/1‑116 AGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGC < 2:112342/116‑1 AGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGG > 3:289091/1‑111 AGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGG < 4:289091/111‑1 AGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGC < 2:52139/90‑1 AGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGC > 1:52139/1‑90 AGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAA > 2:28825/1‑82 AGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAA < 1:28825/82‑1 AGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTC < 3:43422/56‑1 AGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTC > 4:43422/1‑56 GCCCACCACTTCATCTTCCAGAATGCGCGGATACTTCCCGGCCAGCGACCAGGTCATAAAGAACGGTGTCCAGTCGATGTAATTACGCAGCGTTTCGATGCTGGCTTCGACTTCCTGCACGCCGAGACGGTGCGCCACCGGCGGCGTGTA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_bme_pgi/4226737‑4226588‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aGGAAGTCGAAGCCAGCATCGAAACGCTGCGTAATTACATCGACTGGACACCGTTCTTTATGACCTGGTCGCTGGCCGGGAAGTATCCGCGCATTCTGGAAGATGAAGTGGTGGGCGTTGAGGCGCAGCGGCT > NC_000913_3_bme_pgi/4226623‑4226754 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |