New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	3950444 =	23 (0.620)	9 (0.260)	9/230	2.6	31.2%	intergenic (+24/‑63)	ilvL/ilvX	ilvG operon leader peptide/uncharacterized protein
	?	NC_000913_3_bme_pgi	3950470 =	18 (0.520)					intergenic (+50/‑37)	ilvL/ilvX	ilvG operon leader peptide/uncharacterized protein

AGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACCGTTTT  >  NC_000913_3_bme_pgi/3950327‑3950618                                                                                                                                                |                                                                                                                                                     cgCCCTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGttattttt                                                                                                                                                >  4:236946/2‑150 (MQ=255)   gtaccacccactgtgcgccattcatagttagttccccgtcctgaatcttgagaaacagaattttgtgctgttattcattgtctgctcctcggttatgtttttaaggtcaaaaaagACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGa                                                                                                                                              >  1:212318‑M1/116‑150 (MQ=255)      ttCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCt                                                                                                                                           <  3:119463/150‑1 (MQ=255)                                      ccgtcctgaatcttgagaaacagaattttgtgctgttattcattgtctgctcctcggttatgtttttaaggtcaaaaaaaACCCCCGCACCGAAAGGTCCGGGGGtttttttt                                                                                                                                                >  4:24179‑M1/81‑113 (MQ=255)                                      ccgtcctgaatcttgagaaacagaattttgtgctgttattcattgtctgctcctcggttatgtttttaaggtcaaaaaaaACCCCCGCACCGAAAGGTCCGGGGGtttttttt                                                                                                                                                <  3:24179‑M1/33‑1 (MQ=255)                                       cgtcctgaatgttgaggaacggaattttgtgctgttattcattgtctgctcctcggttatgtttttaaggtcaaaaaaaACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATaa                                                                                                          >  2:128206‑M1/80‑150 (MQ=255)                                                                cGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGa                                                                                 <  2:421684/150‑1 (MQ=255)                                                                     cTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGttt                                                                                        <  1:26803/138‑1 (MQ=255)                                                                     cTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGttt                                                                                        >  2:26803/1‑138 (MQ=255)                                                                        cACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCga                                                                                                                            <  1:77800/99‑1 (MQ=255)                                                                        cACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCga                                                                                                                            >  2:77800/1‑99 (MQ=255)                                                                         ttattcattgtctgctcctcggttatgtttttaaggtcaaaaaaaacccccggacctttcggtgcgggggtTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCCGTTCCTCAACATTCAGGACg                                                                        >  2:128206‑M2/72‑150 (MQ=255)                                                                                cGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTGTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGaact                                                                 >  1:475958/1‑150 (MQ=255)                                                                                              gagaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTAt                                                           <  1:458603/142‑1 (MQ=255)                                                                                              gagaTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTAt                                                           >  2:458603/1‑142 (MQ=255)                                                                                                 aTCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGcac                                                >  4:91734/1‑150 (MQ=255)                                                                                                           aaCGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGggtggt                                      >  2:194086/1‑150 (MQ=255)                                                                                                           aaCGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGggtggt                                      >  2:88851/1‑150 (MQ=255)                                                                                                             tcaaaaaaaacccccggacctttcggtgcgggggtCTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTAc                                    >  1:212318‑M2/36‑150 (MQ=255)                                                                                                             cGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTAc                                    >  4:14598/1‑150 (MQ=255)                                                                                                               aaaaaaaacccccggacctttcggtgcgggggtTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACgg                                                                       >  4:24179‑M2/34‑113 (MQ=255)                                                                                                               aaaaaaaacccccggacctttcggtgcgggggtTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACgg                                                                       <  3:24179‑M2/80‑1 (MQ=255)                                                                                                                      ccccccggacctttcggtgcgggtgtTTTTTTTGGCCTTAAAAACATAGCCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGc                           <  1:128206‑M2/124‑1 (MQ=255)                                                                                                                        ccccggacctttcggtgcgggggtTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACaa                                                                                                                 <  2:214634‑M2/38‑1 (MQ=255)                                                                                                                        ccccggacctttcggtgcgggggtTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACaa                                                                                                                 >  1:214634‑M2/25‑62 (MQ=255)                                                                                                                        CCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCgg                         >  1:194086‑M1/1‑150 (MQ=255)                                                                                                                           CGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGGCAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGca                      <  3:238885‑M1/150‑1 (MQ=255)                                                                                                                            ggacctttcggtgcgggggtTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGcac                     >  2:64130‑M2/21‑150 (MQ=255)                                                                                                                                ctttcggtgcgggggtCTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAggg                 <  2:212318‑M2/134‑1 (MQ=255)                                                                                                                                   aaGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGgtgt              <  2:475958/150‑1 (MQ=255)                                                                                                                                    aGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGtgtg             <  3:14598/150‑1 (MQ=255)                                                                                                                                       tCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGa                                                         <  4:181502/103‑1 (MQ=255)                                                                                                                                       tCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGa                                                         >  3:181502/1‑103 (MQ=255)                                                                                                                                           ggggtTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACCg      >  1:346103‑M2/6‑150 (MQ=255)                                                                                                                                               tTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACCGtttt  <  3:236946‑M2/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                                     AGCCCTTCTACGAGTGATTAGCCTGGTCGTGATTAGCGTGGTGGTGATTATTATCCCACCGTGCGGGGCTGCACTTGGACGAGGAAAGGCTTAGAGATCAAGCCTTAACGAACTAAGACCCCCGCACCGAAAGGTCCGGGGGTTTTTTTTGACCTTAAAAACATAACCGAGGAGCAGACAATGAATAACAGCACAAAATTCTGTTTCTCAAGATTCAGGACGGGGAACTAACTATGAATGGCGCACAGTGGGTGGTACATGCGTTGCGGGCACAGGGTGTGAACACCGTTTT  >  NC_000913_3_bme_pgi/3950327‑3950618

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.