| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | 3583427 = | NA (NA) | 32 (0.620) +CGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAG |
20/150 | 2.4 | NA | intergenic (+9/‑56) | yrhA/insA | pseudogene, interrupted by IS1E/IS1 repressor TnpA |
| ? | NC_000913_3_bme_pgi | 4235463 = | NA (NA) | noncoding (42/77 nt) | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences | REP313 (repetitive extragenic palindromic) element; contains 2 REP sequences | |||||
GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_bme_pgi/3583508‑3583427‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGAT > NC_000913_3_bme_pgi/4235463‑4235549 ||||||||||||||||||||||||||||||||||||||||||||||||||||| GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTATGCCTGAT‑‑‑‑‑GCGACGCG > 1:77183/1‑150GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTATGCCTGAT‑‑‑‑‑GCGACGCG > 1:77273/1‑150 ACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTATGCCTGAT‑‑‑‑‑GCGACGCGGT > 4:63838/1‑150 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTC > 3:267127/1‑140 AAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTC < 4:267127/140‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCA < 3:70876/150‑1 AACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCA < 2:596467/150‑1 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGG < 3:564488/150‑1 CAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGG < 2:186980/150‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGC < 3:383140/150‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGC < 4:489532/150‑1 AGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGC < 4:347009/150‑1 CCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTATGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACA < 2:440476/150‑1 ACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATAAGACGCGACGCGGTCGCGTCTTATCAGGCCT > 4:93278/1‑150 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGATAAGACGCGACGCGGTCGCGTCTTATCAGGCCTAC < 3:93278/150‑1 TGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACAGGTC < 1:385016/150‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTATGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCC < 2:77273/150‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTATGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCC < 2:77183/150‑1 ACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCA‑‑‑ACC‑G‑ATGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATAT < 4:209194/150‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCA‑‑‑ACC‑G‑ATGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATAT < 1:319570/147‑1 TCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCA‑‑‑ACC‑G‑ATGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATAT > 2:319570/1‑147 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACA < 1:766062/136‑1 CAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACA > 2:766062/1‑136 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAG > 2:604129/1‑120 CATCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAG < 1:604129/120‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAG < 2:380692/118‑1 TCATACACTAAATCAGTAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAG > 1:380692/1‑118 TAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGC > 3:236275/1‑104 TAAGTTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGC < 4:236275/104‑1 TTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTATGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCC > 3:649619/1‑115 TTGGCAGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTATGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCC < 4:649619/115‑1 AGCATCACCTCGTGCTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTATGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGAg < 3:63838/150‑2 CTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTATGCCTGAT > 1:1052971/1‑56 CTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTATGCCTGAT < 2:1052971/56‑1 CTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTA < 1:176882/48‑1 CTATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTA > 2:176882/1‑48 ATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTATGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGT > 3:194678/1‑69 ATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTATGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGT < 4:194678/69‑1 ATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACA > 3:37455/1‑84 ATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACA < 4:37455/84‑1 ATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT < 1:630229/54‑1 ATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT > 2:630229/1‑54 ATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGA < 3:358064/53‑1 ATGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGA > 4:358064/1‑53 TGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGA > 3:541891/1‑52 TGTATTAATTGCCGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGA < 4:541891/52‑1 TTAATTGCCGAATACGATGTACATATCGGCATCGACCTGT > 4:543107/1‑40 TTAATTGCCGAATACGATGTACATATCGGCATCGACCTGT < 3:543107/40‑1 CGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATC < 1:666974/62‑1 CGAATACGATGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATC > 2:666974/1‑62 TGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACAT < 2:1047817/83‑1 TGTACATATCGGCATCGACCTGTAGGCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACAT > 1:1047817/1‑83 ||||||||||||||||||||||||||||||||||||||||||||||||||||| GGACAGCTGATAGAAACAGAAGCCACTGGAGCACCTCAAAAACACCATCATACACTAAATCAGTAAGTTGGCAGCATCACCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < NC_000913_3_bme_pgi/3583508‑3583427‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GCCTGAT‑‑‑‑‑GCGACGCGGTCGCGTCTTATCAGGCCTACAGGTCGATGCCGATATGTACATCGTATTCGGCAATTAATACATAGCACGAT > NC_000913_3_bme_pgi/4235463‑4235549 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |