New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi = 438535935 (0.880)6 (0.160) 6/264 4.3 15.5% intergenic (+17/‑35) yjeM/yjeN putative transporter/uncharacterized protein
?NC_000913_3_bme_pgi = 4385364 33 (0.900)intergenic (+22/‑30) yjeM/yjeN putative transporter/uncharacterized protein
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAAGCCGGAGACTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGATGC  >  NC_000913_3_bme_pgi/4385214‑4385506
                                                                                                                                                 |                                                                                                                                                   
gAAGCCGGAGACTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTGTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTAc                                                                                                                                                  >  1:455378/1‑149 (MQ=255)
          acggggACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGCTGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAACAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAg                                                                                                                                        <  1:388858/146‑1 (MQ=255)
           cTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAgg                                                                                                                                       <  1:191995/149‑1 (MQ=255)
              ggACAGCACATTGTGGAGGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCCATTTCCCTGAACCATAGCAGCAGAGTGGCCAAAAATCCGCAATGGGCGGTGGAATAACCCGATGCGCTATCGTCAACCTCACGAACGGGca                                                                                                                                    >  2:138029/1‑148 (MQ=255)
                aCAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTa                                                                                                                                  <  1:549282/149‑1 (MQ=255)
                    cacaTTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCGCTATCGTCTACCTGACGATAGGGCGTAAAGa                                                                                                                              >  1:184966/1‑149 (MQ=255)
                    cacaTTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGa                                                                                                                              >  2:406888/1‑149 (MQ=255)
                           cggATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGaaa                                                                                                                       >  2:347872/2‑149 (MQ=255)
                              atgatTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGt                                                                                                                    <  1:367939/149‑1 (MQ=255)
                                   tGGCGGCCCTGTCTTCTTCTCGCTGTCAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGTTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATgg                                                                                                               <  1:407757/149‑1 (MQ=255)
                                     gcggcCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATACGGCGGAAAGACAGGAAATGTTCTCGAt                                                                                                             >  1:666937/1‑149 (MQ=255)
                                        gcCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGac                                                                                                          >  1:685/1‑149 (MQ=255)
                                                ttcttctCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCg                                                                                                  <  2:180460/149‑1 (MQ=255)
                                                 tcttctCGCTGTTGGCGATGGTGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCTGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATGGGGCGTAAAGACAGGCAATGTTGTGGGTGACAGCAGTCgt                                                                                                 >  2:256845/1‑148 (MQ=255)
                                                               gCGATGGCGATTTAGCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGTTGACACCAGCCGGGACCCGGCAATAAc                                                                                   <  2:679259/149‑1 (MQ=255)
                                                                  aTGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGCAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGa                                                                                >  2:412225/1‑149 (MQ=255)
                                                                    ggCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAg                                                                              <  2:685/149‑1 (MQ=255)
                                                                              cAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAg                                                                    <  2:470786/149‑1 (MQ=255)
                                                                               aGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGCCGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAgg                                                                   >  2:53301/1‑149 (MQ=255)
                                                                                   cgaTTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGgcgc                                                               <  2:16612/147‑1 (MQ=255)
                                                                                                   gCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCgg                                               >  2:31915/1‑149 (MQ=255)
                                                                                                     aaaaaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGGAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAGGATGAGATCAGGGCGCTGAAATTTTCTGCCggcg                                             >  2:103491/1‑147 (MQ=255)
                                                                                                      aaaaaTCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGGCAGCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGATGCAATATTCTGCCGGGGa                                            >  1:200021/1‑149 (MQ=255)
                                                                                                                     gCGGTGGAATAACCCGATGCGTTATGGTCTACGTGACGGTGGGGCGTAAAGACAGGAAATGTTATGGATGTCGCCAGCCGGGACGCGGCGATAACCGAAGATGAAATCAGGGCGCTGCCATTTTCTGTCGGGGATGTGGCGGAAAtcgg                             >  2:44689/1‑146 (MQ=255)
                                                                                                                      cGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAAACCGCGAGTAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATagag                            >  1:194165/1‑149 (MQ=255)
                                                                                                                       ggTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGc                           <  1:31915/149‑1 (MQ=255)
                                                                                                                        gTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGCTGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATaagaca                          >  1:617583/1‑144 (MQ=255)
                                                                                                                           gAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGAc                       >  2:427493/1‑149 (MQ=255)
                                                                                                                                      tGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCtt            >  1:541125/1‑149 (MQ=255)
                                                                                                                                      tGCCCTATCCTCTATCTGACCTTAGTGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCTGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTATCGGAAATAGAGCAGACGATTCTCTCtt            <  2:217603/149‑1 (MQ=255)
                                                                                                                                        cccTCTCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCtttt          <  1:406888/149‑1 (MQ=255)
                                                                                                                                           tATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTc       >  2:377055/1‑149 (MQ=255)
                                                                                                                                             tCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGa     >  1:129907/1‑149 (MQ=255)
                                                                                                                                              cGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGAt    <  2:450044/149‑1 (MQ=255)
                                                                                                                                              cGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGAt    <  1:427493/149‑1 (MQ=255)
                                                                                                                                                tCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGAtgc  <  2:580561/149‑1 (MQ=255)
                                                                                                                                                 |                                                                                                                                                   
GAAGCCGGAGACTGGGACAGCACATTGTGGATGATTGGCGGCCCTGTCTTCTTCTCGCTGTTAGCGATGGCGATTTACCAGAACTATTGCAGCAGAGTGGCAAAAAATCCGCAGTGGGCGGTGGAATAACCCGATGCCCTATCGTCTACCTGACGATAGGGCGTAAAGACAGGAAATGTTATGGATGACACCAGCCGGGACCCGGCAATAACCGAAGATGAAATCAGGGCGCTGCAATTTTCTGCCGGGGATGTAGCGGAAATAGAGCAGACGATTCTCTCTTTTGTCGATGC  >  NC_000913_3_bme_pgi/4385214‑4385506

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.