New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	2118466 =	NA (NA)	9 (0.210)	7/272	4.3	2.3%	noncoding (1/186 nt)	REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences	REP144 (repetitive extragenic palindromic) element; contains 4 REP sequences
	?	NC_000913_3_bme_pgi	4245166 =	387 (9.140)					noncoding (74/126 nt)	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGTTGATGGCATCAAGTAAGCCGCGCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGA  >  NC_000913_3_bme_pgi/2118320‑2118606                                                                                                                                                   |                                                                                                                                              tGTTGATGGCATCAAGTAAGCCGCGCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGcc                                                                                                                                             <  1:553251/149‑1 (MQ=255) tGTTGATGGCATCAAGTAAGCCGCGCAGGATGGCGCTGGCGCCCCGCTTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGcc                                                                                                                                             <  1:103386/149‑1 (MQ=255)     gATGGCATCAAGTAAGCCGCGCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGTCTCTTTTTgagttgg                                                                                                                                         >  1:160931/1‑143 (MQ=255)     caTGGCATCAACTATGCCGCGTAGGATGGTTCTTTCTCCACGTTGTCCGCAAGTGTGGTTGCTCAGAACAAGTAATTCCCTTTTTTCCTCATAAATTTGCTGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGAt                                                                                                                                         <  2:411259/148‑1 (MQ=255)         gCATCAAGTAAGCCGCGCAGGATGGCGTGGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGa                                                                                                                                     <  2:458831/149‑1 (MQ=255)          cATCAAGTAAGCCGCGCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGAc                                                                                                                                    >  1:204285/1‑149 (MQ=255)           aTCAAGTAAGCCGCGCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACg                                                                                                                                   >  1:589852/1‑149 (MQ=255)           aTCAAGTAAGCCGCGCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGCGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTTCCTGATGCGACg                                                                                                                                   >  2:42567/1‑149 (MQ=255)                gTAAGCCGCGCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGAc                                                                                                                              >  1:152464/1‑149 (MQ=255)                    gCCGCGCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGt                                                                                                                          >  1:233653/1‑149 (MQ=255)                     ccGCGCAGGATGGCACCGTCGCCACGATTCCCGCAAGTGTGCTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTc                                                                                                                         <  1:596478/149‑1 (MQ=255)                       gcggAGGAGTGCGCTGGCGCCAGGATGGCCGCAAGTGTGGTTGCCCAGAAGAAGTAATTTCATTTTTTCCTCATAAAGTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCtt                                                                                                                       <  2:253261/149‑1 (MQ=255)                              aTGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGc                                                                                                                <  2:533927/149‑1 (MQ=255)                                        cGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGAcc                                                                                                      <  1:244216/149‑1 (MQ=255)                                           taCGGTTGCCGTGAGTGGGGTTGTCGAGAATAAGTGATTTGATTTTGTTCTTATAGATTTGATGCCAGGTGAGGCTGTGTTTGTTGTGTTCGTTGCCGCTTTTTGCCTGATGCGGCGCTGGGGCGTCTTATTAGGCCTACTAGACCCGa                                                                                                   <  2:241999/148‑1 (MQ=255)                                           cACGATTGCCGCAAGTGTGGTTGCCCAGACTAAGTAATTTCATTTTTTCCTCATCAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGa                                                                                                   <  1:662649/149‑1 (MQ=255)                                               aTTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCCAGcac                                                                                               >  2:445362/1‑149 (MQ=255)                                                         gtgtGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAg                                                                                     <  2:606122/149‑1 (MQ=255)                                                              gTTGCCCAGAATAAGGAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACgg                                                                                <  1:612265/149‑1 (MQ=255)                                                                  cccAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCCGGCCTACAAGACCCGATCACAGAACCGTAGGGCGGGTaa                                                                            >  1:141274/1‑149 (MQ=255)                                                                   gcAGAGTAAGTATTTTCGTTTTTCCCGCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCTTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAg                                                                           <  2:461488/148‑1 (MQ=37)                                                                   ccAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGcc                                                                                                                                             <  1:80793/83‑1 (MQ=255)                                                                   ccAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGcc                                                                                                                                             >  2:80793/1‑83 (MQ=255)                                                                   ccAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATc                                                                                                                    >  1:495522/1‑108 (MQ=255)                                                                   ccAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATc                                                                                                                    <  2:495522/108‑1 (MQ=255)                                                                       aaTAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGt                                                                       <  2:146220/149‑1 (MQ=255)                                                                       aaTAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGt                                                                       >  1:226493/1‑149 (MQ=255)                                                                               aTTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCTTCTTATCAGAGCTACAAGACCCGAGCCCAGAACCGTAGGACGGATAAAGCGTT‑CCcaccg                                                              >  2:159478/1‑149 (MQ=37)                                                                                  tCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCTTCTTATCAAGCCTACAAGACCCGAGCACAGAACCGTAAAACGCGTAAGGCGTTACAcgcgccg                                                            >  1:244800/1‑145 (MQ=37)                                                                                            cTCATCAATTTGATGCAAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGTACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCa                                                 <  2:611087/149‑1 (MQ=255)                                                                                            cTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCa                                                 >  1:417598/1‑149 (MQ=255)                                                                                             tCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTT‑CACGCCGCATCCGGCCTTCAg                                                >  1:311502/1‑149 (MQ=255)                                                                                             tCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCAg                                                >  1:140259/1‑149 (MQ=255)                                                                                               aTAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCAGTg                                              >  2:526273/1‑149 (MQ=255)                                                                                               aTAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTT‑CACGCCCCATCCGGCATTCAGTg                                              >  2:662000/1‑149 (MQ=255)                                                                                                 aagtttGATGCCAGGTGAGGTTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCAGTGcc                                            <  2:487919/146‑1 (MQ=255)                                                                                                    tttGATGCAAGGTGAGGGTGCGGTTGTTTTGTTCGTTGCCTCTTTTTGCCTGATGCGACGCTGACGCGTCTTACCAGCCATACCAGCAGCGAACTGATGACCGTAGGACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCAGTGCCTGa                                         <  2:88141/149‑1 (MQ=25)                                                                                                        aTGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGACTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTT‑CACGCCGCATCCGGCCTTCAGTACCTGATGCg                                     >  2:406602/1‑149 (MQ=255)                                                                                                          gCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGCAGGAACAGGCGTT‑CACGCCGCATCCGGCATTCAGTGCCTGATGCGAc                                   >  1:18538/1‑149 (MQ=255)                                                                                                                    gCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGt                         <  1:642457/149‑1 (MQ=255)                                                                                                                       gCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGGCGCCGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCtt                      <  1:71790/149‑1 (MQ=255)                                                                                                                         gtttgtttTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGAGACGAGCACAGAACCGTAAGACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCAGTGACTGATGCGACGCTGACGCGTCTTAt                    >  1:694990/1‑149 (MQ=255)                                                                                                                                   ttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTGGGACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGGCCCGCCATGTCAGGccaccg          >  1:558836/1‑145 (MQ=21)                                                                                                                                   ttCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACa          >  2:621138/1‑149 (MQ=255)                                                                                                                                    tCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAg         <  1:270973/149‑1 (MQ=255)                                                                                                                                     cGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGAATAAGGCGTT‑CACGCCGCCTCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACacg        >  2:467867/1‑147 (MQ=255)                                                                                                                                           cgatttttGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGa  <  2:41463/146‑1 (MQ=255)                                                                                                                                           cGCTTTTTGCCTGATGCGACGCTGATGCGTCTTATCATGCCTACAAGACCCGAACACAGAACCGTAGGACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGCCGCGTCTTATCAGGCCTACAGGCCCCGa  >  1:740662/1‑149 (MQ=25)                                                                                                                                                   |                                                                                                                                              TGTTGATGGCATCAAGTAAGCCGCGCAGGATGGCGCTGTCGCCACGATTGCCGCAAGTGTGGTTGCCCAGAATAAGTAATTTCATTTTTTCCTCATAAATTTGATGCCAGGTGAGGCTGCGTTTGTTTTGTTCGTTGCCGCTTTTTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAAGACCCGAGCACAGAACCGTAGGACGGATAAGGCGTT‑CACGCCGCATCCGGCATTCAGTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACAGGTCCCGA  >  NC_000913_3_bme_pgi/2118320‑2118606

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.