New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 2304902	38 (0.510)	7 (0.090)	6/280	10.1	15.7%	noncoding (486/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
	?	NC_000913_3_bme_pgi	= 2304985	NA (NA)					noncoding (569/655 nt)	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences	REP161 (repetitive extragenic palindromic) element; contains 12 REP sequences
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

CGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACG  >  NC_000913_3_bme_pgi/2304755‑2305048                                                                                                                                                    |                                                                                                                                                   cGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACa                                                                                                                                                   <  1:891725/149‑1 (MQ=37)  gTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTAATGCGACTCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACAt                                                                                                                                                  <  1:642513/149‑1 (MQ=255)    aGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGAcctac                                                                                                                                                <  1:1095160/149‑5 (MQ=255)      gTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGCCCTACCCCGCTGTGAAGTGCCCCACCCCGTAGGTCGTATCAGGCGGTTGCGCCGCACCCCACATCTaa                                                                                                                                              >  2:675843/1‑149 (MQ=14)       ttGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGCCGCTGGCGCGTCTTATCAGGCCTCCACCCCTCTGAAGTGCTCCACCCCGTAGGTCGGATCAGGCGGTTCCGCCACACCCGCCCTCTacc                                                                                                                                             >  2:560559/1‑147 (MQ=14)       ttGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTCGGTCGGATAAGGCGGTTACGCCGCATCCGACGTcgtac                                                                                                                                             >  1:404125/1‑145 (MQ=255)         ggATAAGGCGGTCACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGc                                                                                                                                           <  1:1043821/149‑1 (MQ=17)           aTAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGccc                                                                                                                                         >  1:452533/1‑149 (MQ=37)                    ttACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCCCCACCCCGTAGGTAGGATAAGGCGGTTACGCCGCATCCGCCATCCAACGCCCAAGCCGGtt                                                                                                                                >  2:998753/1‑149 (MQ=255)                        gccgcATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTCGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGTTTGCCt                                                                                                                            >  1:1175194/1‑149 (MQ=17)                           gtgtCCGACTGCAAACGTGCGTGCCGGTTGCCTGATGTTATGCTTGCATGTCTCGTCAGGCCTAGACCGCTGTGAAGTGCGCCACCCCGTTGGTCTGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGAt                                                                                                                         <  2:969566/146‑1 (MQ=11)                              tCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGGGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCg                                                                                                                      >  1:612459/1‑149 (MQ=17)                               ccGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGAAATCTAACGCCCACGCCGGTTGCCTGagcgca                                                                                                                     >  1:674425/1‑144 (MQ=255)                                     tCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGa                                                                                                                          <  2:839386/138‑1 (MQ=32)                                     tCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGa                                                                                                                          >  1:839386/1‑138 (MQ=33)                                      ccAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGgc                                                                                                              >  2:27232/1‑149 (MQ=32)                                            tCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGACGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCCACATCTAACGCCCCAGCCGGTTGCCTGATCCGACGCTGGCCCGTCt                                                                                                        >  2:273466/1‑149 (MQ=11)                                            tCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGc                                                                                                                              <  2:893372/127‑1 (MQ=11)                                            tCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGc                                                                                                                              >  1:893372/1‑127 (MQ=11)                                                                                                                cccGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCaa                                    <  2:1067039/149‑1 (MQ=31)                                                                                                                 ccGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCGAGCCGGTTGCCTGGTGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTCTGGAGTGCTCCACCCCGTAGGACGGATAAGGCGCTTACACCGCCTCCAAc                                   >  2:700042/1‑149 (MQ=11)                                                                                                                 ccGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAAc                                   <  1:378679/149‑1 (MQ=32)                                                                                                                  cGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACa                                  <  1:27232/149‑1 (MQ=32)                                                                                                                  cGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACa                                  <  1:1310643/149‑1 (MQ=32)                                                                                                                  cGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACa                                  >  2:581666/1‑149 (MQ=32)                                                                                                                       gTCGGATAAGGCGGTTACGCCGCATCCGATATCTGACTCCCAACCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAAAATCTaa                             >  1:652938/1‑149 (MQ=11)                                                                                                                       gTCGGATAAGGCGGTTACGCCGCATCCGACATTTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTaa                             <  1:830247/149‑1 (MQ=25)                                                                                                                       gTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGCCTTATCAGGCCTACACCGCTGCGAAATGCCCCACCCCATAGGTTGTATAACGCGCTCGCGCCCCCTCCCACATCtta                             >  2:305489/1‑147 (MQ=11)                                                                                                                       gTCGGACAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTaa                             <  1:526105/149‑1 (MQ=25)                                                                                                                        tCGGATAAGGCGGTGACGCCGCATCCGACATCTAAGGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAAc                            <  2:919417/149‑1 (MQ=25)                                                                                                                           gATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCACGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATCTGGCGGTTACGCCCCCTCCAACATCAAAAGcc                         >  1:744457/1‑149 (MQ=11)                                                                                                                              aaGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGa                      <  2:1242537/149‑1 (MQ=39)                                                                                                                                     ctcggccgcATGCGACATCCAACGCCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCGCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGtt               <  1:765073/145‑1 (MQ=11)                                                                                                                                            gcATCCGCCATCAAACGCCCAAGCCGGCTGCCTGATGCGCCGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGAGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGAt        <  2:872314/149‑1 (MQ=11)                                                                                                                                                ccGATATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTCTCAGGCCTACACCGCTGTGATGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGa    <  1:975680/149‑1 (MQ=255)                                                                                                                                                ccGACATCTAACGCCCAAGCGGGTTTCGTGATGCGCCGCTGTCACGTCTTATCAGGCTCACACCGCTGTGAAGTGCTCCTCCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGa    <  1:834507/149‑1 (MQ=11)                                                                                                                                                ccGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTGACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGa    <  1:1050860/149‑1 (MQ=255)                                                                                                                                                  gACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCACCATCTAACGCCCGAGCCGGTTGCCTGCTGCGACg  >  1:99531/1‑149 (MQ=255)                                                                                                                                                  gACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACAt                                 >  1:829269/1‑118 (MQ=33)                                                                                                                                                  gACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACAGCTGTGGAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCGCCTGGCAACATCGACCGCCCGCGCCGGTTGACTGGTgcggcg  >  2:70391/1‑149 (MQ=11)                                                                                                                                                    |                                                                                                                                                   CGTAGGTTGGATAAGGCGGTTACGCCGCATCCGACATCCAACGTCCGAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTCGGATAAGGCGGTTACGCCGCATCCGACATCTAACGCCCAAGCCGGTTGCCTGATGCGACGCTGGCGCGTCTTATCAGGCCTACACCGCTGTGAAGTGCTCCACCCCGTAGGTTGGATAAGGCGGTTACGCCGCATCCAACATCTAACGCCCGAGCCGGTTGCCTGATGCGACG  >  NC_000913_3_bme_pgi/2304755‑2305048

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.