New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 275149	NA (NA)	64 (1.350)	41/282	0.2	98.5%	intergenic (‑32/‑176)	insH1/mmuP	IS5 transposase and trans‑activator/CP4‑6 prophage; putative S‑methylmethionine transporter
	?	NC_000913_3_bme_pgi	= 869877	1 (0.020)					coding (467/1539 nt)	gsiB	glutathione ABC transporter periplasmic binding protein

GGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACCTTCTTTGGAT  >  NC_000913_3_bme_pgi/275004‑275294                                                                                                                                                  |                                                                                                                                                  ggACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGa                                                                                                                                                <  2:329591/149‑1 (MQ=32)  gACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCATATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAg                                                                                                                                               <  1:375743/149‑1 (MQ=17)    cAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGc                                                                                                                                             <  1:224740/149‑1 (MQ=34)                       gTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCt                                                                                                                          >  2:467746/1‑149 (MQ=255)                          tGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCCGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTCGCGGCCCtttt                                                                                                                       >  2:466207/1‑149 (MQ=255)                               gcgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTAt                                                                                                                  <  1:644288/149‑1 (MQ=255)                                cgcTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGCCTTGTTAGCACCTTACGGAGGCGTTATGAGCTGGCAGACCTTTTGTTATc                                                                                                                 >  2:743651/1‑149 (MQ=14)                                       tgctgAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCCCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGattat                                                                                                          <  1:218731/149‑1 (MQ=255)                                           gAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttt                                                                                                                        >  1:28667/1‑131 (MQ=255)                                           gAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCttt                                                                                                                        <  2:28667/131‑1 (MQ=255)                                              ttCTCTGTCGCCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGCCTCCAGATGACAAACATGATCTCATCCCAGGGCCTTGTTCGCACCTTCCGGCGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccc                                                                                                   <  2:296731/149‑1 (MQ=18)                                              ttCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATccc                                                                                                   >  1:340069/1‑149 (MQ=255)                                                 aCTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTCGCGGCCCTTTTTGTATCTGATTATTAATCCCCaa                                                                                                <  2:661359/149‑2 (MQ=255)                                                   tGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCAccc                                                                                              >  2:48431/1‑149 (MQ=255)                                                      cGGCGAAGGTAAGTTGAGGATTCATGATGAACCCCGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCt                                                                                           <  1:328948/149‑1 (MQ=255)                                                        gCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTAt                                                                                         >  1:786340/1‑149 (MQ=255)                                                                     gatgaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACCAAAATGATCTCATCTCCGGGTCGTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGgcg                                                                            >  1:410498/1‑149 (MQ=37)                                                                        gaCTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCgg                                                                         <  1:550016/149‑1 (MQ=255)                                                                              tgatgaACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCt                                                                   <  1:345428/149‑1 (MQ=255)                                                                                     cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTGTTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTg                                                            >  2:98983/1‑149 (MQ=255)                                                                                     cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTg                                                            >  1:115264/1‑149 (MQ=255)                                                                                     cccTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTg                                                            >  1:111442/1‑149 (MQ=255)                                                                                               tGGCTCCAGATGAAACACGTGCTATCATATCGGGGTCTTCTTGGCACCTTACGCGGTCATGATGATCAGGCTGCCCTTTGTGTAGCTTATTATTTATCGCCACCCTGTATGGAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGtt                                                  <  2:618799/149‑1 (MQ=255)                                                                                                 gctcaggATGACAAACATGGTCTCAATTCCGGGCCTTGTTCGCCCGTTCCGGAGGCGTTACTACCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGCCATCTGCGTCTGGTGCAGGGTTGa                                                <  2:387581/143‑1 (MQ=255)                                                                                                    ccAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACtt                                             <  1:48431/149‑1 (MQ=255)                                                                                                     cAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCATTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACttt                                            >  1:115827/1‑149 (MQ=255)                                                                                                      aagtGACAAACATGATCTCATAGCAGGCACGTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTAGTAGCTGGTTAATAAGCCCCACCCGCTATTAAGCGCCCGGCTCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTg                                           <  2:556109/146‑1 (MQ=255)                                                                                                           aCAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCGATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGGGCAGGGTTGACTTTGCGtta                                      >  1:266734/1‑148 (MQ=255)                                                                                                             aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGt                                                   <  1:764361/134‑1 (MQ=255)                                                                                                             aaaCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGt                                                   >  2:764361/1‑134 (MQ=255)                                                                                                               aCATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGtt                                  >  2:356846/1‑149 (MQ=255)                                                                                                                  tGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGACCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAAc                               >  1:577522/1‑149 (MQ=255)                                                                                                                         atatCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAAcgcg                        <  2:571630/149‑1 (MQ=255)                                                                                                                          tatCAGGGACTTGTTCGCACCGTTCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCgg                       <  2:244232/149‑1 (MQ=255)                                                                                                                             gaGGGACTTGTTCGAACCTTCCGGAGGCGGTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGtat                    <  2:340069/148‑1 (MQ=255)                                                                                                                             caaggATTTCTTCGCACCTTCCGGAGGCATTATGAGCTGGCGGCCCTTTGTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGtat                    <  2:154049/146‑1 (MQ=255)                                                                                                                               gggACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATaa                  >  2:357673/1‑149 (MQ=255)                                                                                                                               aggACTTGTTCGCACCTTCCGGAGGCCTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATaa                  <  1:775207/148‑1 (MQ=255)                                                                                                                                ggACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAAc                 >  2:766355/1‑149 (MQ=255)                                                                                                                                   cTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACaaa              <  2:111442/149‑1 (MQ=255)                                                                                                                                    ttGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAAc             >  1:511333/1‑149 (MQ=255)                                                                                                                                    ttGTTCGCACCTTCCGGAGGCGTTACGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAAc             <  2:649782/149‑1 (MQ=255)                                                                                                                                       ttCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTACCAACCGCGGTATAACAAACctt          >  1:564313/1‑149 (MQ=255)                                                                                                                                       ttCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACctt          >  2:614924/1‑149 (MQ=255)                                                                                                                                              cTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATc                                                                                                     <  1:277435/51‑1 (MQ=255)                                                                                                                                              cTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATc                                                                                                     >  2:277435/1‑51 (MQ=255)                                                                                                                                               ttCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACCTTCTTTGGAt  <  1:766355/149‑1 (MQ=255)                                                                                                                                                  |                                                                                                                                                  GGACAAGAAAATCTCTTTTCTGGTCTGACGGCGCTTACTGCTGAATTCACTGTCGGCGAAGGTAAGTTGATGACTCATGATGAACCCTGTTCTATGGCTCCAGATGACAAACATGATCTCATATCAGGGACTTGTTCGCACCTTCCGGAGGCGTTATGAGCTGGCGGCCCTTTTTGTATCTGATTATTAATCCCCACCCGCTATTAAGCGCCCGGCGCGGGCATCTGCGTCTGGTGCAGGGTTGACTTTGCATTCTGTTAACAAACGCGGTATAACAAACCTTCTTTGGAT  >  NC_000913_3_bme_pgi/275004‑275294

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.