New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	= 2897909	35 (0.740)	4 (0.090)	4/264	6.2	11.0%	intergenic (‑39/+55)	ygcS/ygcU	putative MFS sugar transporter; membrane protein/putative FAD‑linked oxidoreductase
	?	NC_000913_3_bme_pgi	= 2897913	32 (0.720)					intergenic (‑43/+51)	ygcS/ygcU	putative MFS sugar transporter; membrane protein/putative FAD‑linked oxidoreductase
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

GAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGGATAGATAGTACCCGTATTCATAATGCCATTAGGATCGAACTGCTTTTTCAGCCCTTCCAGCAACGCCCACG  >  NC_000913_3_bme_pgi/2897766‑2898049                                                                                                                                                |                                                                                                                                             gagaACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTg                                                                                                                                         >  1:140167/1‑149 (MQ=255) gagaACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTg                                                                                                                                         >  2:477655/1‑149 (MQ=255)    aaCATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTgaga                                                                                                                                      >  2:227898/1‑149 (MQ=255)       aTAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTATCGCCTGAGAAGc                                                                                                                                   >  2:479054/1‑149 (MQ=255)                        gtgCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGcccc                                                                                                                  <  2:579179/149‑1 (MQ=255)                            gcCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCCTTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCa                                                                                                              >  2:214209/1‑149 (MQ=255)                             ccGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGCCTTCTCGCCTGAGAAGCCGCAAAGGCACCGCCCCgccct                                                                                                             >  2:611871/1‑145 (MQ=255)                                     gAGCGCAGCAATGCGGCAGTGAAAACGGTGAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGCCCGATAATTAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAAc                                                                                                     <  1:374730/149‑1 (MQ=255)                                        cgcAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCt                                                                                                  <  1:227898/149‑1 (MQ=255)                                                tGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTCCTCGCCTGAGAAGCCGAAAAGGCACCGCCCCGTCATCGCGGAACGCTGCCTGaca                                                                                          <  2:288053/149‑1 (MQ=255)                                                        tGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTAttt                                                                                  <  1:641460/149‑1 (MQ=255)                                                          aaaaCGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTAATCGCGGAACGCTGCCTGACACATTAttttt                                                                                >  2:619726/1‑149 (MQ=255)                                                            aaCGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTCTTTTTCa                                                                              >  2:692784/1‑149 (MQ=255)                                                                  tAAGCGTTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGga                                                                        <  1:676323/149‑1 (MQ=255)                                                                  tAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGga                                                                        <  1:656031/149‑1 (MQ=255)                                                                    aGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGgata                                                                      <  1:795270/149‑1 (MQ=255)                                                                      gcgTAAATCATCCATTCCCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAATAACTGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGgataga                                                                    <  2:547015/147‑1 (MQ=255)                                                                      cGGTAAATCATCCATTCGCACCGGTGAGGTTTGTATCTTTACCCATTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCCATCGgataga                                                                    >  2:602441/1‑149 (MQ=255)                                                                       ggTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCt                                                                                                  <  1:762759/118‑1 (MQ=255)                                                                       ggTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCt                                                                                                  >  2:762759/1‑118 (MQ=255)                                                                           aaTCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTCCATTGTCCGGAAATAAAAACGGCTTCTCGGCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGCAACAGTATTGTTCAATCGGAACGATAGtg                                                               >  1:361301/1‑148 (MQ=255)                                                                             tcatcCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACTCATTATTTTTCAATCGGATAGATAGTAcc                                                             >  1:718387/1‑149 (MQ=255)                                                                                 ccATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATAATTTTTCCATCGGATACGTAGTACCCGTa                                                         >  2:415026/1‑149 (MQ=255)                                                                                        cACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGGATAGATAGTACCCGTATTCATaa                                                  <  1:49473/149‑1 (MQ=255)                                                                                         aCCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGGATAGATAGTACCCGTATTCATAAt                                                 <  1:214869/149‑1 (MQ=255)                                                                                                 aGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGGATAGATAGTACCCGTATTCATAATGCCATTAg                                         >  1:216100/1‑149 (MQ=255)                                                                                                       cATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTAAGAAGCCGAAAAGGCAACGCGCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGGATAGATAGTACCAGTATTCATAATGCCATTAGGATCGa                                   >  1:754249/1‑149 (MQ=255)                                                                                                               cgccTTCATTGTCGGGCAATAAGACCGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGGATAGATAGTACCCCTCTTCATAATGCCATTAGGATCGAACTGCttt                           <  2:474201/147‑1 (MQ=255)                                                                                                                  cTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGGATAGATAGTACCCGTATTCATAATGCCATTAGGATCGAACTGCTTTTTc                        >  2:790451/1‑149 (MQ=255)                                                                                                                            cGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGGATAGATAGTACCCGTATTCATAATGCCATTAGGATCGAACTGCTTTTTCAGCCCTTCCa              <  2:677801/149‑1 (MQ=255)                                                                                                                               taataaGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGGATAGATAGTACCCGTATTCATAATGCCATTAGGATCGAACTGCTTTTTCAGCCCTTCCAGCa           <  1:338155/149‑1 (MQ=255)                                                                                                                                   aacaaCGGCTTCTCGCCTGAGAAACCGAAAACGCAACCCCCCGTCATCGCGGAACGCTGCCTGACACAATAATACTCAACCCGATAGATAGTACCCGTATTCATAACGCCATTACCATCGAACTGCTTTTTCAGCCCAGCCAGCAACGc       <  2:153939/146‑1 (MQ=255)                                                                                                                                    aGAAGGGCTTCGCACCTGAGAGGGCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAAGCGGATAGATAGTACCCGGATTCATAATGCCATTAGGATCGAACTGCTTTTTCAGCTCTTCCAGCAACGcc      <  2:782739/149‑1 (MQ=255)                                                                                                                                     gAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGGATAGATAGTACCCGTATTCATAATGCCATTAGGAACGCACTGCTTTTTCAGCTCTTCCAGCAACGcgc     >  2:371891/1‑147 (MQ=255)                                                                                                                                        cGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGGATAGATAGTACCCGTATTCATAATGCCATTAGGATCGAACTGCTTTTTCAGCCCTTCCAGCAACGCCCAcg  <  1:807129/149‑1 (MQ=255)                                                                                                                                                |                                                                                                                                             GAGAACATAACCGTCGGTCAGGTGTGCGCCGAAAGTGAGCGCAGCAATGCGGCAGTGAAAACGGTTAAGCGGTAAATCATCCATTCGCACCGGTGAAGTGTTCATCTTTACCCCTTCATTGTCCGGTAATAAGAACGGCTTCTCGCCTGAGAAGCCGAAAAGGCAACGCCCCGTCATCGCGGAACGCTGCCTGACACATTATTTTTCAATCGGATAGATAGTACCCGTATTCATAATGCCATTAGGATCGAACTGCTTTTTCAGCCCTTCCAGCAACGCCCACG  >  NC_000913_3_bme_pgi/2897766‑2898049

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.