New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_bme_pgi	3798221 =	59 (1.300)	4 (0.100)	4/264	6.1	7.2%	intergenic (+14/+18)	waaL/waaU	O‑antigen ligase/lipopolysaccharide core biosynthesis
	?	NC_000913_3_bme_pgi	3798249 =	50 (1.210)					coding (1064/1074 nt)	waaU	lipopolysaccharide core biosynthesis
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATG  >  NC_000913_3_bme_pgi/3798073‑3798367                                                                                                                                                     |                                                                                                                                                   ttgATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCACTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGttt                                                                                                                                                    >  1:211310/1‑149 (MQ=255) ttgAGATTAACCCTCGGCATTGTGGGGACTGCACTCGGTGATGTGGTCATCTGGGCACGCCGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCACTACTAATCGTAACAATAAAATTAGTTACAAATAAATAAGttt                                                                                                                                                    >  2:475799/1‑149 (MQ=255)    gaaatAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATTTCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTaag                                                                                                                                                 <  2:129547/145‑1 (MQ=255)      atTAACGCTTGGCATTGTGTGGATTGGACTCAGTGATTTGATCATATGGGCACGCAGCATTCCAATTATAATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTaagaa                                                                                                                                               <  2:318445/149‑1 (MQ=255)          aCGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGa                                                                                                                                           <  1:441686/149‑1 (MQ=255)                 gCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTaaaa                                                                                                                                    >  1:296079/1‑149 (MQ=255)                         gggATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATACCCGCTATACTCTCCATTGCCGGCGTTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCActtc                                                                                                                            <  2:690065/149‑1 (MQ=255)                          gggttGGACTCAGTGATGTGATCATATGGGCACGCAGAATTCCAATTATCCGTATATCCGCCATACTCATCTTACCCGTCATTAATAGCAGTAAAAATACACTTGATTAAGAATAAACACGTATACAACGTTAGTTAACACACAcatct                                                                                                                           >  2:317973/4‑149 (MQ=255)                          ggATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGt                                                                                                                                             <  1:65185/131‑1 (MQ=255)                          ggATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGt                                                                                                                                             >  2:65185/1‑131 (MQ=255)                          ggATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCActtct                                                                                                                           <  2:59365/149‑1 (MQ=255)                                  cTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATATTCGTAACAATACAATTAATTAAGAATAATCAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCtata                                                                                                                   <  1:734842/149‑1 (MQ=255)                                     agagatgtgatCAAGTGGGCAAGCAGCATTCAAATTATCATTATATCCGCTATAGTCCTCTGACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACaa                                                                                                                <  2:100602/146‑1 (MQ=255)                                     aGTGATGTGATCATATGGGCACTCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACaa                                                                                                                <  2:620442/149‑1 (MQ=255)                                     aGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACaa                                                                                                                <  1:166983/149‑1 (MQ=255)                                         atgtgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCATAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACACACTTCTTATCTATTCAACTTa                                                                                                            >  2:86740/1‑149 (MQ=255)                                          tgtgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTACCTTCTTATATATACAACTTaa                                                                                                           >  2:192776/1‑149 (MQ=255)                                            tgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTCACAATAAAATTAATTAAGAATAAACAAGTTTAAGAAGTGAATTAAAACTCACTTCTTATATATACAACTTAAtc                                                                                                         >  1:554674/1‑149 (MQ=255)                                            tgatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCCATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAAtc                                                                                                         >  2:333319/1‑149 (MQ=255)                                             gatCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTTAtct                                                                                                        >  1:745233/1‑149 (MQ=255)                                              atCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAAtatc                                                                                                       >  1:652371/1‑149 (MQ=255)                                              atCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATATATACAACTTAAtctc                                                                                                       >  2:397464/1‑149 (MQ=255)                                               tCATATGGGCACGTAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATctct                                                                                                      <  1:672877/149‑1 (MQ=255)                                                cATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTAATCGTCATTAATAATCGTAACAATAAAATTAATTAAGCATAAACCAGATTAACTAGTCATTTACAACTCACTTCTTATCTATACTACTTAATCTCtt                                                                                                     <  2:793825/149‑1 (MQ=255)                                                    tGGGCACGCAGCATTCCAATTATCATTATATCCGCTAGAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACt                                                                                                 <  1:18956/149‑1 (MQ=255)                                                      ggCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCAGTTAAAGTGTAAAGAACTTAATTTCttttgctt                                                                                               >  1:380046/1‑144 (MQ=255)                                                       gCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGaa                                                                                              <  2:379596/149‑1 (MQ=255)                                                       gCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTAACTTCTTATCTATACAACTTAATTTTTTTATTGaa                                                                                              >  1:144379/1‑149 (MQ=255)                                                        cACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAAt                                                                                             <  1:99623/149‑1 (MQ=255)                                                          cGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTCTCAGATGTTAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTa                                                                                           <  1:355555/149‑1 (MQ=255)                                                                    cAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGttt                                                                                 >  1:8624/1‑149 (MQ=255)                                                                     aaTGATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTc                                                                                <  1:776053/149‑1 (MQ=255)                                                                          tCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTAt                                                                           <  1:682708/149‑1 (MQ=255)                                                                          tCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTAt                                                                           <  1:682444/149‑1 (MQ=255)                                                                            aacatatCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTACAGTTTCAGTATct                                                                         >  2:628173/4‑148 (MQ=255)                                                                            aTTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAATGTTTCAGTATCg                                                                         >  1:530655/1‑149 (MQ=255)                                                                             ttATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTaa                                                                                                                                                  <  1:755969/75‑1 (MQ=255)                                                                             ttATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTaa                                                                                                                                                  >  2:755969/1‑75 (MQ=255)                                                                             ttATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTAc                                                                                                  <  2:589928/123‑1 (MQ=255)                                                                             ttATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTAc                                                                                                  >  1:589928/1‑123 (MQ=255)                                                                             ttATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGa                                                                        >  2:560321/1‑149 (MQ=255)                                                                                       cgttgTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTAc                                                              <  1:580803/145‑1 (MQ=255)                                                                                        ataGTCCTCTTACTTGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTAAATTCTTATCTCTTCAACTTTATCTCTTTACTTAATTATTTAAAGTTTCATTATCTATATAttttgtc                                                             >  2:518414/1‑146 (MQ=255)                                                                                          aGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATGTATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGt                                                           <  1:622392/149‑1 (MQ=255)                                                                                               tctTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGTTATCTTTTACCTTATATg                                                      >  1:117218/1‑149 (MQ=255)                                                                                                  taatCGTCATTAATAATCATAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATTTCTTTCCTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTg                                                   <  2:593463/146‑1 (MQ=255)                                                                                                    cTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTggg                                                 <  1:195180/149‑1 (MQ=255)                                                                                                     tCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTgggg                                                >  1:287522/1‑149 (MQ=255)                                                                                                          aTTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACt                                           >  2:4805/1‑149 (MQ=255)                                                                                                              ataatCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTAttt                                       <  2:287522/149‑1 (MQ=255)                                                                                                              ataatCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGCAGGGGATACTAttt                                       <  2:296079/149‑1 (MQ=255)                                                                                                                  tCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGtat                                   >  1:385407/1‑149 (MQ=255)                                                                                                                  tCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGtat                                   >  1:385541/1‑149 (MQ=255)                                                                                                                     tAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTGTCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAgt                                >  1:628864/1‑148 (MQ=255)                                                                                                                     tAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGa                                >  1:303845/1‑149 (MQ=255)                                                                                                                            acaatTAATTAAGAAGAAACAAGTTTAAGAAGTGAGTTAAACCTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTatga                         <  2:105988/149‑1 (MQ=255)                                                                                                                                   agtgaGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCg                  <  1:377739/145‑1 (MQ=255)                                                                                                                                                   tttAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATg  <  1:335070/149‑1 (MQ=255)                                                                                                                                                   tttAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATg  <  1:334373/149‑1 (MQ=255)                                                                                                                                                     |                                                                                                                                                   TTGATATTAACGCTTGGCATTGTGGGGATTGGACTCAGTGATGTGATCATATGGGCACGCAGCATTCCAATTATCATTATATCCGCTATAGTCCTCTTACTCGTCATTAATAATCGTAACAATACAATTAATTAAGAATAAACAAGTTTAAGAAGTGAGTTAAAACTCACTTCTTATCTATACAACTTAATCTCTTTACTGAATTAGTTAAAGTTTCAGTATCGATATCTTTTACCGTATATGTTGGGGATACTATTTGTATAGATTTATGATGATTCGGGGACCAAATTAAATG  >  NC_000913_3_bme_pgi/3798073‑3798367

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.