Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913_3_bme_pgi 1,927,949 A→C R297R (CGT→CGG ptrB ← protease II

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913_3_bme_pgi1,927,9490AC100.0% 178.1 / NA 51R297R (CGT→CGGptrBprotease II
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base C (21/30);  total (21/30)

CTTGCGGTTAATTTGGCGCAAACTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGC  >  NC_000913_3_bme_pgi/1927802‑1928091
                                                                                                                                                   |                                                                                                                                              
cTTGCGGTTAATTTGGCGCAAACTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCg                                                                                                                                              <  1:569820/150‑1 (MQ=255)
      gTTAATTTGGCGCAAACTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATaa                                                                                                                                        <  1:146184/150‑1 (MQ=255)
             tGGCGCAAACTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGTCAAAg                                                                                                                                 >  4:314767/1‑150 (MQ=255)
               gcgcAAACTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCGGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGtt                                                                                                                               >  1:485881/1‑150 (MQ=255)
                 gcAAACTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGtttt                                                                                                                             >  3:18095/1‑150 (MQ=255)
                  cAAACTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGttttt                                                                                                                            <  1:143211/150‑1 (MQ=255)
                    aaCTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGc                                                                                                                          <  2:135615/150‑1 (MQ=255)
                      cTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCg                                                                                                                        >  1:69548/1‑150 (MQ=255)
                        ggTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTg                                                                                                                      >  2:398173/1‑150 (MQ=255)
                          ttAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGc                                                                                                                    >  2:111716/1‑150 (MQ=255)
                          ttAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGc                                                                                                                    <  2:467847/150‑1 (MQ=255)
                               ccGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTg                                                                                                               <  2:491097/150‑1 (MQ=255)
                                  cgcTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGaa                                                                                                            <  1:963/150‑1 (MQ=255)
                                           tctTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATaa                                                                                                   >  1:394776/1‑150 (MQ=255)
                                                 accaccAGCCAGTCGGTAAATAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGa                                                                                             <  4:130483/150‑1 (MQ=255)
                                                 accaccAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGa                                                                                             >  2:3235/1‑150 (MQ=255)
                                                   cgccagccagTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCACCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATg                                                                                           <  2:423876/148‑1 (MQ=255)
                                                   caccaGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATg                                                                                           >  3:248571/1‑150 (MQ=255)
                                                   caccaGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATg                                                                                           >  1:16864/1‑150 (MQ=255)
                                                     ccagccagTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGGATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCt                                                                                         >  3:93412/1‑150 (MQ=255)
                                                      cagccagTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTg                                                                                        <  1:90746/150‑1 (MQ=255)
                                                         ccagTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTa                                                                                     >  2:159005/1‑150 (MQ=255)
                                                           agTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGt                                                                                   <  1:153840/150‑1 (MQ=255)
                                                                 tAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGAAAAAAAAAAAAAAACGATGCTGGTAGTGATCaa                                                                             <  2:205017/150‑1 (MQ=255)
                                                                  aaaCAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACGGTTCCCACTGTTGGTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAg                                                                            <  2:244503/150‑1 (MQ=255)
                                                                   aaCAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAgg                                                                           >  2:517785/1‑150 (MQ=255)
                                                                   aaCAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAgg                                                                           <  4:12609/150‑1 (MQ=255)
                                                                    aCAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGCTGCGGGTAGTGATCAAGGc                                                                          >  2:186600/1‑150 (MQ=255)
                                                                    aCAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGAAGATAAAAACGATGCTGGTAGTGATCAAGGc                                                                          <  2:317688/150‑1 (MQ=255)
                                                                       gCGTAAACCCTTCCGGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGt                                                                       <  2:251825/150‑1 (MQ=255)
                                                                           aaaCCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTc                                                                   <  1:262232/150‑1 (MQ=255)
                                                                                      gCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTCGAACGCAGACTAGCCCGACGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTgc                                                        <  4:16945/150‑1 (MQ=255)
                                                                                            tgTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTgcggcgcg                                                  <  3:239431/150‑1 (MQ=255)
                                                                                              ttttCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGGGATCTAGGCTGCATTCGTGATCTTTgcggcgcggc                                                >  1:281830/1‑150 (MQ=255)
                                                                                                 tCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGa                                             <  2:340038/150‑1 (MQ=255)
                                                                                                    cgTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGaaaa                                          <  3:161659/150‑1 (MQ=255)
                                                                                                      tGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAaaac                                        <  3:325393/150‑1 (MQ=255)
                                                                                                         cGGAATTAACTCTTCCAACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAaaacaaa                                     >  3:342127/1‑150 (MQ=255)
                                                                                                          ggAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAaaacaaac                                    <  1:398173/150‑1 (MQ=255)
                                                                                                                aaCTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCg                              <  1:462151/150‑1 (MQ=255)
                                                                                                                 aCTCTTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCgg                             >  1:430056/1‑150 (MQ=255)
                                                                                                                  ctctTCCCACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGc                            >  1:121276/1‑150 (MQ=255)
                                                                                                                        ccACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCACAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGc                      <  4:341582/150‑1 (MQ=255)
                                                                                                                         cACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCa                                                                                                                                    >  2:110209/1‑39 (MQ=255)
                                                                                                                         cACTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCa                                                                                                                                    <  1:110209/39‑1 (MQ=255)
                                                                                                                           cTGTTGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCAt                   >  1:471421/1‑150 (MQ=255)
                                                                                                                              ttGCTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTc                >  4:160402/1‑150 (MQ=255)
                                                                                                                                 cTCATCACGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCcgc             <  1:111716/150‑1 (MQ=255)
                                                                                                                                   catcaCGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGt           <  2:69548/150‑1 (MQ=255)
                                                                                                                                       aCGCATACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCcag       <  1:516973/150‑1 (MQ=255)
                                                                                                                                            tACGGGTCCGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGc  <  2:16864/150‑1 (MQ=255)
                                                                                                                                                   |                                                                                                                                              
CTTGCGGTTAATTTGGCGCAAACTGGTTAACCCGCGCTGACGCTCTTCAACCACCAGCCAGTCGGTAAACAGCGTAAACCCTTCCAGCATGATGTTTTCGCGTGGCGGAATTAACTCTTCCCACTGTTGCTCATCACGCATACGGGTACGGTATAAGCCAAAGTTTTTGCCGTGGCGGTTGGAACGCAGATAAAAACGATGCTGGTAGTGATCAAGGCTGTATTCGTGATCTTTGCGGCGCGGCAGAAAAACAAACGGCTCGGCATCGGCCATTTCCGCGTCCAGCAGGC  >  NC_000913_3_bme_pgi/1927802‑1928091

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: