mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_bme_pgi | 526,800 | 0 | A | G | 27.1% | 214.6 / 76.6 | 118 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 526,796 | 0 | C | G | 27.0% | 282.6 / 100.1 | 126 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 4,296,061 | 0 | C | T | 26.3% | 193.5 / 79.4 | 118 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_bme_pgi | 526,792 | 0 | A | C | 25.0% | 263.3 / 104.2 | 136 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_bme_pgi | 3,332,822 | 0 | G | A | 25.0% | 179.8 / 61.1 | 100 | intergenic (‑87/+40) | yhbE/rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| * | NC_000913_3_bme_pgi | 3,332,823 | 0 | T | C | 25.0% | 181.4 / 61.7 | 100 | intergenic (‑88/+39) | yhbE/rpmA | EamA family inner membrane putative transporter/50S ribosomal subunit protein L27 |
| * | NC_000913_3_bme_pgi | 223,854 | 0 | T | A | 20.0% | 48.0 / 11.3 | 25 | noncoding (84/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| * | NC_000913_3_bme_pgi | 223,855 | 0 | T | A | 20.0% | 49.1 / 11.3 | 25 | noncoding (85/1542 nt) | rrsH | 16S ribosomal RNA of rrnH operon |
| Marginal new junction evidence (lowest skew 10 of 536 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_bme_pgi | = 4542691 | 70 (0.720) | 34 (0.380) | 27/242 | 4.6 | 33.6% | intergenic (+57/‑425) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_bme_pgi | = 4542987 | 69 (0.760) | intergenic (+353/‑129) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_bme_pgi | = 3943624 | NA (NA) | 28 (0.300) | 23/246 | 5.7 | 41.3% | intergenic (+114/‑80) | gltU/rrlC | tRNA‑Glu/23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_bme_pgi | = 4037457 | 42 (0.430) | intergenic (+122/‑62) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 382205 | NA (NA) | 37 (0.380) | 24/258 | 5.8 | NA | coding (532/906 nt) | insD1 | IS2 transposase TnpB |
| ? | NC_000913_3_bme_pgi | = 382224 | NA (NA) | coding (551/906 nt) | insD1 | IS2 transposase TnpB | |||||
| * | ? | NC_000913_3_bme_pgi | 4542683 = | 70 (0.720) | 21 (0.230) | 21/242 | 6.1 | 23.3% | intergenic (+49/‑433) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) |
| ? | NC_000913_3_bme_pgi | 4542997 = | 73 (0.810) | intergenic (+363/‑119) | fimE/fimA | tyrosine recombinase/inversion of on/off regulator of fimA/major type 1 subunit fimbrin (pilin) | |||||
| * | ? | NC_000913_3_bme_pgi | = 3427065 | NA (NA) | 31 (0.340) | 21/242 | 6.1 | NA | intergenic (‑32/+11) | alaU/ileU | tRNA‑Ala/tRNA‑Ile |
| ? | NC_000913_3_bme_pgi | = 3427068 | NA (NA) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913_3_bme_pgi | 225456 = | 5 (0.050) | 30 (0.330) | 20/242 | 6.3 | 86.6% | noncoding (76/77 nt) | ileV | tRNA‑Ile |
| ? | NC_000913_3_bme_pgi | = 3427056 | NA (NA) | intergenic (‑23/+20) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||
| * | ? | NC_000913_3_bme_pgi | = 228108 | NA (NA) | 29 (0.310) | 21/252 | 6.4 | NA | noncoding (2350/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon |
| ? | NC_000913_3_bme_pgi | = 228124 | NA (NA) | noncoding (2366/2904 nt) | rrlH | 23S ribosomal RNA of rrnH operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 3946053 | 5 (0.050) | 28 (0.300) | 20/252 | 6.7 | 85.2% | noncoding (2350/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon |
| ? | NC_000913_3_bme_pgi | = 3946069 | NA (NA) | noncoding (2366/2904 nt) | rrlC | 23S ribosomal RNA of rrnC operon | |||||
| * | ? | NC_000913_3_bme_pgi | = 4037450 | NA (NA) | 20 (0.220) | 18/246 | 7.1 | 15.1% | intergenic (+115/‑69) | alaT/rrlA | tRNA‑Ala/23S ribosomal RNA of rrnA operon |
| ? | NC_000913_3_bme_pgi | = 4168568 | 119 (1.230) | intergenic (+121/‑73) | gltT/rrlB | tRNA‑Glu/23S ribosomal RNA of rrnB operon | |||||
| * | ? | NC_000913_3_bme_pgi | 225468 = | 10 (0.100) | 20 (0.220) | 17/242 | 7.3 | 68.2% | intergenic (+11/‑32) | ileV/alaV | tRNA‑Ile/tRNA‑Ala |
| ? | NC_000913_3_bme_pgi | = 3427068 | NA (NA) | intergenic (‑35/+8) | alaU/ileU | tRNA‑Ala/tRNA‑Ile | |||||