New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_bme_pgi = 3653229NA (NA)147 (0.970) 110/258 0.2 90.2% intergenic (‑31/‑2) insH1/yhiS IS5 transposase and trans‑activator/pseudogene
?NC_000913_3_bme_pgi 3992704 = 16 (0.100)coding (1552/2547 nt) cyaA adenylate cyclase

Only 100 of 317 total aligned reads displayed.

ACCGCGCGCCAAATATTGAGTCGATCATCAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATCGTTAACCTGGAATATGACCCGACAGCGGCGTTCCGC  >  NC_000913_3_bme_pgi/3992555‑3992853
                                                                                                                                                     |                                                                                                                                                     
aCCGCGCGCCAAATATTGAGTCGATCATCAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGc                                                                                                                                                       <  1:1615622/150‑1 (MQ=255)
aCCGCGCGCCAAATATTGAGGCGATCATCAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTAGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGGTTGTATATTAAAGGTAACGGCATTGTCGATTTGc                                                                                                                                                       >  4:794163/1‑150 (MQ=255)
  cgcgcgGCAAATATTGAGTCGATCACCAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGCTTAACGGCCTGCCGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGAGTTGCCt                                                                                                                                                     >  4:185652/1‑150 (MQ=255)
  cgcgcgCCAAATATTGAGTCGATCATCAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGc                                                                                                                                                       <  2:897353/148‑1 (MQ=255)
  cgcgcgCCAAATATTGAGTCGATCATCAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCt                                                                                                                                                     >  4:1010868/1‑150 (MQ=255)
      cgcCAAATATTGAGTCGATCATCAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAATGGCATTGTCGATTTGCCTAAGg                                                                                                                                                 >  2:1704785‑M2/1‑149 (MQ=255)
       gcCAAATATTGAGTCGATCATCAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGGATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGga                                                                                                                                                >  2:832564‑M2/1‑148 (MQ=255)
       gcCAAATATTGAGTCGATCATCAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGga                                                                                                                                                <  4:826008‑M2/150‑3 (MQ=255)
         cAAATATTGAGTCGATCATCAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaag                                                                                                                                              >  2:428882‑M2/1‑146 (MQ=255)
         agaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGc                                                                                                                                              <  3:244198‑M2/10‑1 (MQ=255)
          gaaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCa                                                                                                                                             >  3:1019310‑M2/140‑150 (MQ=255)
           aaaatctcttttcttgtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctacagatgacaaacatnatctcatatcaggganttgttcgcaccttcCCTAAGTTGCAg                                                                                                                                            <  1:1049005‑M2/12‑1 (MQ=255)
           aaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAg                                                                                                                                            >  4:5877‑M2/139‑150 (MQ=255)
           aaaatctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctagggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAg                                                                                                                                            >  2:1326383‑M2/139‑150 (MQ=255)
           aaaatctcttttctggtctgacggcgcttactgctgaattcaccgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAg                                                                                                                                            <  2:1628407‑M2/12‑1 (MQ=255)
               ttGAGTCGATCATCAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcga                                                                                                                                        <  1:72065‑M2/150‑11 (MQ=255)
                ctcttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGAt                                                                                                                                       <  1:1663648‑M2/17‑1 (MQ=255)
                  cttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATgg                                                                                                                                     <  1:850490‑M2/19‑1 (MQ=255)
                  cttttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATgg                                                                                                                                     >  4:1001244‑M2/132‑150 (MQ=255)
                     ttctggtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCg                                                                                                                                  <  1:459485‑M2/22‑1 (MQ=255)
                       atcatcAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcgg                                                                                                                                <  3:942367‑M2/150‑19 (MQ=255)
                          gtctgacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGAc                                                                                                                             >  1:816786‑M2/124‑150 (MQ=255)
                            cagccatcagccGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaa                                                                                                                           >  2:494535‑M2/1‑127 (MQ=255)
                              gacggcgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACgtgt                                                                                                                         <  2:57768‑M2/31‑1 (MQ=255)
                                   cgcttactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCAc                                                                                                                    >  1:1449300‑M2/115‑150 (MQ=255)
                                      ccGCTGGAATATAACCGTTCCCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcgg                                                                                                                 >  4:236562‑M2/1‑117 (MQ=255)
                                       tactgctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTc                                                                                                                                   <  2:865791‑M2/21‑1 (MQ=255)
                                          tGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctga                                                                                                             <  3:282181‑M2/150‑38 (MQ=255)
                                           ggAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgac                                                                                                            >  4:454946‑M2/1‑112 (MQ=255)
                                            gAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgact                                                                                                           <  1:1280563‑M2/150‑40 (MQ=255)
                                            gAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgact                                                                                                           <  3:537616‑M2/150‑40 (MQ=255)
                                            gAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGCAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggtgaaattctt                                                                                                                      <  4:147298‑M2/139‑29 (MQ=255)
                                            ctgaattcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGAc                                                                                                                             >  1:1337487‑M2/106‑132 (MQ=255)
                                                ataACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagt                                                                                                       >  2:1455542‑M2/1‑107 (MQ=255)
                                                 ttcactgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTgcg                                                                                                      >  4:214011‑M2/101‑150 (MQ=255)
                                                 taACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGc                                                                                                                                                       <  3:857931/101‑1 (MQ=255)
                                                 taACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTCCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtc                                                                                                      <  1:411200‑M2/150‑45 (MQ=255)
                                                    actgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACgtgt                                                                                                                         >  2:1201899‑M2/98‑128 (MQ=255)
                                                    actgtcggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACgtgt                                                                                                                         <  1:1201899‑M2/31‑1 (MQ=255)
                                                        tACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactca                                                                                                         >  2:106739‑M2/1‑99 (MQ=255)
                                                        tACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactca                                                                                                         <  1:106739‑M2/140‑42 (MQ=255)
                                                         cggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTg                                                                                              <  3:214011‑M2/58‑1 (MQ=255)
                                                          ggcgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTTCGCTTACCTGc                                                                                             >  3:100743‑M2/92‑150 (MQ=255)
                                                            cgaaggtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGcac                                                                                           <  3:414146‑M2/61‑1 (MQ=255)
                                                             gAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt                                                                                          >  1:943839‑M2/1‑94 (MQ=255)
                                                                 gtaagttgatgactcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGcaccgaca                                                                                      >  4:712451‑M2/85‑150 (MQ=255)
                                                                   aCTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctt                                                                                          >  1:548528‑M2/1‑88 (MQ=255)
                                                                    agttgatgactcatgatgaaccctgttctatggctccagatcacaaccatgatctcatatcagggacttgttcgcaccttcCCTAGGTTGCAGGTGATGGTCGTCGACGTGGCGCACCGCTTCCTGCTGCTCTTACCTGcaccgtcaccg                                                                                   <  2:64301‑M2/69‑1 (MQ=255)
                                                                        tggCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagc                                                                               >  2:668285‑M2/1‑83 (MQ=255)
                                                                            gTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcat                                                                                       >  3:328750‑M2/1‑79 (MQ=255)
                                                                            gTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcat                                                                                       <  4:328750‑M2/138‑60 (MQ=255)
                                                                              tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACgtgt                                                                                                                         <  3:750631‑M2/31‑1 (MQ=255)
                                                                              tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGcaccgacac                                                                                     >  3:170724‑M2/72‑138 (MQ=255)
                                                                              tcatgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGctct                                                                         >  1:1490239‑M2/72‑150 (MQ=255)
                                                                              gggCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattt                                                                         >  1:1108775‑M2/1‑77 (MQ=255)
                                                                                atgatgaaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTAc                                                                       >  1:1401692‑M2/70‑150 (MQ=255)
                                                                                  aTGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttc                                                                     <  1:1003977‑M2/150‑78 (MQ=255)
                                                                                  aTGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggcgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtt                                                                                    <  2:1526039‑M2/135‑63 (MQ=255)
                                                                                  aTGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggcgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtt                                                                                    >  1:1526039‑M2/1‑73 (MQ=255)
                                                                                      tttAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctccc                                                                 <  1:321257‑M2/150‑82 (MQ=255)
                                                                                      aaccctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCg                                                                 <  2:816786‑M2/87‑1 (MQ=255)
                                                                                        tAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgag                                                                                <  2:1360719‑M2/133‑67 (MQ=255)
                                                                                         cctgttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCgtgt                                                              >  1:883309‑M2/61‑150 (MQ=255)
                                                                                          aCGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttctcccgattttttctcccgtaa                                                             <  3:567341‑M2/150‑86 (MQ=255)
                                                                                             ttctatggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGtgagc                                                          >  2:1134035‑M2/57‑149 (MQ=255)
                                                                                                 gctgACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgcctt                                                      >  2:1239792‑M2/1‑58 (MQ=255)
                                                                                                  ctgACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttg                                                     >  1:610124‑M2/1‑57 (MQ=255)
                                                                                                  ctgACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttct                                                                                                                    >  3:922997‑M2/1‑57 (MQ=255)
                                                                                                   ggctccagatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGcc                                                    >  2:72033‑M2/51‑150 (MQ=255)
                                                                                                      ccTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatc                                                 >  3:135588‑M2/1‑53 (MQ=255)
                                                                                                       cTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCTATTGTCCTGAGgaatgttctaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatca                                                >  1:1602029‑M2/1‑52 (MQ=255)
                                                                                                       cTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatca                                                >  2:1159333‑M2/1‑52 (MQ=255)
                                                                                                       cTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatca                                                >  3:356080‑M2/1‑52 (MQ=255)
                                                                                                       cTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatca                                                >  1:198397‑M2/1‑52 (MQ=255)
                                                                                                        tCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactca                                                                                                         <  4:390918‑M2/92‑42 (MQ=255)
                                                                                                         cgcgCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttctccatgtttgaggcgattttttctcccgtaaatgccttgaatcagc                                              >  3:557783‑M2/1‑50 (MQ=255)
                                                                                                         agatgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTgg                                              >  1:9668‑M2/45‑150 (MQ=255)
                                                                                                            tgacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTAc                                                                       <  2:1494993‑M2/81‑1 (MQ=255)
                                                                                                             gacaaacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGAt                                          >  3:1044946‑M2/41‑150 (MQ=255)
                                                                                                                 aacatgatctcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATc                                      <  4:563681‑M2/114‑1 (MQ=255)
                                                                                                                 aacatgatctcatatcagggacttgtgcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATc                                      <  4:526264‑M2/114‑1 (MQ=255)
                                                                                                                      gTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttt                                                                       >  3:632943‑M2/1‑37 (MQ=255)
                                                                                                                      gTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttt                                                                       <  4:632943‑M2/112‑76 (MQ=255)
                                                                                                                        atatTAAAGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgttt                               >  2:633082‑M2/1‑35 (MQ=255)
                                                                                                                          tcatatcagggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATCGTTAACCTg                             >  1:277356‑M2/28‑150 (MQ=255)
                                                                                                                              aaGGTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgc                         <  2:1414320‑M2/150‑122 (MQ=255)
                                                                                                                                 gTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccat                      <  1:181833‑M2/150‑125 (MQ=255)
                                                                                                                                 gTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttc                                                                                                                     >  4:1032832‑M2/1‑26 (MQ=255)
                                                                                                                                 gTAACGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttc                                                                                                                     <  3:1032832‑M2/55‑30 (MQ=255)
                                                                                                                                 agggacttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATCGTTAACCTGGAATATg                      >  2:1110441‑M2/21‑150 (MQ=255)
                                                                                                                                    aCGGCATTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcgg                                                                                                                 <  4:918042‑M2/56‑34 (MQ=255)
                                                                                                                                       ttgttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATCGTTAACCTGGAATATGACCCGa                >  1:653780‑M2/15‑150 (MQ=255)
                                                                                                                                         aTTGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggag              >  2:321257‑M2/1‑18 (MQ=255)
                                                                                                                                          ttcgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATCGTTAACCTGGAATATGACCCGACAg             >  2:201853‑M2/12‑150 (MQ=255)
                                                                                                                                          ttGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttct                                                                    >  3:686990‑M2/1‑17 (MQ=255)
                                                                                                                                          ttGTCGATTTGCCTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttct                                                                    <  4:686990‑M2/95‑79 (MQ=255)
                                                                                                                                            cgcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATCGCTAACCTGGAATATGACCCGACAgcg           <  2:1564349‑M2/141‑1 (MQ=255)
                                                                                                                                             gcaccttcCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATCGTTAACCTGGAATATGACCCGACAgcgg          <  2:945457‑M2/142‑1 (MQ=255)
                                                                                                                                                     ccTAAGgaaggtgcgaataagcggggaaattcttctcggctgactcagtcatttcatttcttcatgtttgagccgattttttctcccgtaaatgccttgaatcagcctatttagaccgtttcttcgccatttaaggcgttatccccagtt  <  4:274434‑M2/150‑145 (MQ=255)
                                                                                                                                                     CCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATCGTTAACCTGGAATATGACCCGACAGCGGCGTTCCGc  >  1:1142909‑M2/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
ACCGCGCGCCAAATATTGAGTCGATCATCAGCCATCAGCCGCTGGAATATAACCGTTACCTGAATAAACTGGTGGCGTGGGCATGGTTTAACGGCCTGCTGACCTCGCGCACCCGTTTGTATATTAAAGGTAACGGCATTGTCGATTTGCCTAAGTTGCAGGAGATGGTCGCCGACGTGTCGCACCATTTCCCGCTGCGCTTACCTGCACCGACACCGAAGGCGCTCTACAGCCCGTGTGAGATCCGCCATCTGGCGATTATCGTTAACCTGGAATATGACCCGACAGCGGCGTTCCGC  >  NC_000913_3_bme_pgi/3992555‑3992853

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.