Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_000913_3_hsa_pgi3,781,1520AG22.8% 378.4 / 31.2 194intergenic (+135/‑63)lldD/trmLL‑lactate dehydrogenase, FMN‑linked/tRNA Leu mC34,mU34 2'‑O‑methyltransferase, SAM‑dependent
Reads supporting (aligned to +/- strand):  ref base A (91/58);  new base G (0/44);  total (91/103)
Fisher's exact test for biased strand distribution p-value = 2.55e-15
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 194 total aligned reads displayed.

GGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTC  >  NC_000913_3_hsa_pgi/3781054‑3781248
                                                                                                  |                                                                                                
ggAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAg                                                                                                 >  1:572402/1‑100 (MQ=255)
 gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACGCCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgg                                                                                                <  2:4629445/100‑1 (MQ=255)
 gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgg                                                                                                <  1:1017029/100‑1 (MQ=255)
 gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgg                                                                                                <  1:1232273/100‑1 (MQ=255)
 gagaGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgg                                                                                                <  1:278637/100‑1 (MQ=255)
  agagGGGACCGTTCGGCGCTGTATGTACTCGCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAgg                                                                                                <  1:6226841/99‑1 (MQ=255)
  agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAggg                                                                                               <  2:4917726/100‑1 (MQ=255)
  agagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAggg                                                                                               >  2:4623627/1‑100 (MQ=255)
   gagGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGCGAGGGCCGGGGTGAggg                                                                                               >  2:5405896/1‑99 (MQ=255)
     ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGa                                                                                             >  1:399859/1‑99 (MQ=255)
     ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGa                                                                                             >  2:3521391/1‑99 (MQ=255)
     ggggACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGa                                                                                             >  2:1767825/1‑99 (MQ=255)
        gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAg                                                                                         <  1:3582497/100‑1 (MQ=255)
        gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAg                                                                                         <  1:511603/100‑1 (MQ=255)
        gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAg                                                                                         <  1:1900550/100‑1 (MQ=255)
        gACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAg                                                                                         <  2:635867/100‑1 (MQ=255)
         aCCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACGGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAg                                                                                         <  1:2184426/99‑1 (MQ=255)
          ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGc                                                                                       <  1:4228255/100‑1 (MQ=255)
          ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGc                                                                                       <  2:96280/100‑1 (MQ=255)
          ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGc                                                                                       <  1:3035238/100‑1 (MQ=255)
          ccGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCCTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGc                                                                                       <  1:605820/100‑1 (MQ=255)
            nttCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGAGGAGAGGGCCGGGGTGAGGGGAAAAGGTCg                                                                                     >  1:5901720/2‑100 (MQ=255)
            gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCg                                                                                     >  2:5185658/1‑100 (MQ=255)
            gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCg                                                                                     >  1:2619934/1‑100 (MQ=255)
            gTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCg                                                                                     >  1:4148976/1‑100 (MQ=255)
                ggCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACt                                                                                 >  1:3713108/1‑100 (MQ=255)
                    cTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCt                                                                              >  2:2739647/1‑99 (MQ=255)
                    cTGTAGGGACTCCCCCCCTCGGAAACGACACCGCACTCTTTTTTTCCCCCTCGCCCCCCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCt                                                                              <  2:491955/99‑1 (MQ=37)
                        atgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCACACTGCTCAcc                                                                          >  2:4000904/1‑99 (MQ=255)
                         tgtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCaa                                                                        >  1:829933/1‑100 (MQ=255)
                          gtaCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAt                                                                       >  2:3358096/1‑100 (MQ=255)
                            aCTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAAttt                                                                     >  1:1422596/1‑100 (MQ=255)
                              cccctccctCTGAAACGACCCCGCCCTCTTTTTTTCCCCCCCGCCCCCCCGGGGGGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGc                                                                               <  1:4827124/87‑1 (MQ=255)
                               cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                                  >  1:2253604/1‑100 (MQ=255)
                               cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                                  >  2:4067887/1‑100 (MQ=255)
                               cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                                  >  2:3790051/1‑100 (MQ=255)
                               cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                                  >  2:6247015/1‑100 (MQ=255)
                               cccTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCt                                                                  >  1:1627669/1‑100 (MQ=255)
                                ccaccctctGAGACGCCACCACACTCTTGTTTTCCCCCTCGCCCCTCCGGGGAGAGGGCCGGGTTCGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTg                                                                 <  2:3473112/95‑1 (MQ=25)
                                 cccACTCGGAAACGACACCCCACTCTTTTTTTCCCCCCCCCCCCCCCGGGGGGAGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                                <  1:695799/98‑1 (MQ=255)
                                 cTCACTCTGAACCGCCAGCGCACTCTTTTTTCCTCCCTCGCCCCTCCGGGGGGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                                <  2:4955524/100‑1 (MQ=255)
                                 cTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTg                                                                 >  2:1725043/1‑99 (MQ=255)
                                 cTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGc                                                                >  1:3932921/1‑100 (MQ=255)
                                   cACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTa                                                              >  2:2874626/1‑100 (MQ=255)
                                    aCTCTGAAACGACACCGCACTC‑TTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATc                                                            >  2:2137428/1‑100 (MQ=255)
                                        tGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg                                                         >  1:5468490/1‑100 (MQ=255)
                                        tGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTg                                                         >  1:4622016/1‑100 (MQ=255)
                                         gAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGc                                                        >  2:800420/1‑100 (MQ=255)
                                          aaaCGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTc                                                                             <  1:613700/78‑1 (MQ=255)
                                           aaCGACCCCGCACTCTTTTTTTCCCCCGCGCCCCTCCGGGGGGAGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGccc                                                      <  1:4629807/100‑1 (MQ=255)
                                            ccGACACCGCACTCTTTTTTTCTCCCCCGCCCCCCGGGGGGGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                                     <  1:4061060/99‑1 (MQ=255)
                                                  ccGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                >  2:2522334/1‑99 (MQ=255)
                                                  ccGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                >  1:927584/1‑99 (MQ=255)
                                                     cACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAg                                            >  1:861734/1‑100 (MQ=255)
                                                     cACGCTTTTTTTCCCCCCCGCCCCCCCGGGGGGAGGGCGGGGGGGAGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                                     <  2:1500607/91‑1 (MQ=255)
                                                      cctctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgg                                           <  1:3836756/99‑1 (MQ=255)
                                                      aCTCTTTTTTTCTCCCTCGCCCCCCCGGGGGGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                <  1:1946747/95‑1 (MQ=255)
                                                        tctTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg                                         >  1:2851122/1‑100 (MQ=255)
                                                          tttttttCTCCCTCGCCCCGCGGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCg                                                   <  2:596636/88‑1 (MQ=255)
                                                          tttttttCTCCCTCGCCCCCCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAgggg                                         <  2:3683027/98‑1 (MQ=255)
                                                            ttttcCTCCCTCGCCCCCCGGGGGAGAGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAggggg                                        <  2:327234/97‑1 (MQ=255)
                                                            ttttcCCCCCTCCCCCCTCCGGGGGGAGGGCGGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATcc                                                           <  1:100961/78‑1 (MQ=37)
                                                             ttttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAg                                     >  2:227740/1‑99 (MQ=255)
                                                             ttttCCCCCTCGCCCCCCGGGGGGGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAg                                     <  1:2840254/99‑1 (MQ=255)
                                                             ttttCCCCCTCGCCCCCCCGGGGGGGGGGCGGGGGGGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAg                                     <  1:3284487/99‑1 (MQ=255)
                                                              tttCTCCCCCGCCCCCCGGGGGGGGGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGt                                    <  1:6112637/99‑1 (MQ=255)
                                                               ttCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                                  >  1:3538265/1‑100 (MQ=255)
                                                                actcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGaa                                                                                            <  2:1511731/40‑1 (MQ=255)
                                                                 ctcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                                >  1:1795870/1‑100 (MQ=255)
                                                                 ctcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                                >  2:199591/1‑100 (MQ=255)
                                                                  tcCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                                >  1:4511406/1‑99 (MQ=255)
                                                                  ccccTCGCCCCCCCGGGGGGGGGGCCGGGGGGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTAt                                  <  1:5760279/96‑1 (MQ=255)
                                                                    ccccGCCCCGCCGGGGGGAGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGcccc                                                     <  2:2643026/73‑1 (MQ=255)
                                                                    ccTCGCCCCTCCGGGGGGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGc                                <  1:5675851/97‑1 (MQ=255)
                                                                    ccTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                              >  2:44200/1‑99 (MQ=255)
                                                                    ccTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATCTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTa                              >  1:435956/1‑99 (MQ=255)
                                                                     cccGCCCCTCCGGGGGGGGGGCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCg                                                   <  2:488442/75‑1 (MQ=255)
                                                                     cccGCCCCTCCGGGGGGGGGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa                            <  1:710783/98‑1 (MQ=255)
                                                                     cTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTaaa                            >  1:3727977/1‑100 (MQ=255)
                                                                         ccccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCACACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACAt                         >  2:6071896/1‑99 (MQ=255)
                                                                          ccccccGGGGGGGGGGCCGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAAc                           <  1:30449/96‑1 (MQ=255)
                                                                          cccTCCGGGGGGGGGGCGGGGGGGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCAc                                                <  2:1349335/75‑1 (MQ=255)
                                                                           cccccGGGGGGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                      <  2:3370236/97‑1 (MQ=255)
                                                                           ccTCGGGGGGGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGt                      <  1:1096270/100‑1 (MQ=255)
                                                                           ccTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCg                       >  2:1115156/1‑99 (MQ=255)
                                                                            ccccGGGGGGGGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa                     <  1:241027/98‑1 (MQ=255)
                                                                            cTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa                     >  2:299886/1‑100 (MQ=255)
                                                                             tCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa                     >  2:5827511/1‑99 (MQ=255)
                                                                             tCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTAc                    >  2:5715868/1‑100 (MQ=255)
                                                                                ggggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt                  >  2:858897/1‑99 (MQ=255)
                                                                                ggggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt                  >  2:5091292/1‑99 (MQ=255)
                                                                                ggggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACtt                  >  2:1450072/1‑99 (MQ=255)
                                                                                  ggggagGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTAc               <  2:4828650/97‑1 (MQ=255)
                                                                                  ggAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTa                     >  2:5621433/1‑94 (MQ=255)
                                                                                    agagGGCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGa             <  2:4565922/100‑1 (MQ=255)
                                                                                      ggggCGGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCACCGCACTAAGGGGGCAGTATGCTAAACATCGt                      <  1:299524/88‑1 (MQ=255)
                                                                                         gCCGGGGTGGGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg        <  1:2219383/100‑1 (MQ=255)
                                                                                          ccGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAg        >  2:1946923/1‑99 (MQ=255)
                                                                                           cGGGGGGAGGGAAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATg                                 <  2:5514104/73‑1 (MQ=255)
                                                                                             gggTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAAt    >  1:2306207/1‑100 (MQ=255)
                                                                                                  |                                                                                                
GGAGAGGGGACCGTTCGGCGCTGTATGTACTCCCTCACTCTGAAACGACACCGCACTCTTTTTTTCTCCCTCGCCCCTCCGGGGAGAGGGCCGGGGTGAGGGGAAAAGGCCGCACTGCTCACCAATTTTCTGCTATCCTGCCCCCGCACTAAGGGGGCAGTATGCTAAACATCGTACTTTACGAACCAGAAATTC  >  NC_000913_3_hsa_pgi/3781054‑3781248

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑