Predicted mutation
evidence seq id position mutation annotation gene description
MC JC NC_000913_3_hsa_pgi 257,908 Δ776 bp [crl] [crl]

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ NC_000913_3_hsa_pgi 257908–258676 258683 8–776 281 [0] [0] 279 [crl] [crl]

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi = 2579070 (0.000)269 (1.080) 148/282 0.2 100% intergenic (+8/‑769) crl/crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers
?NC_000913_3_hsa_pgi 258684 = 0 (0.000)pseudogene (9/331 nt) crl pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator;regulator; Surface structures; transcriptional regulator of cryptic csgA gene for curli surface fibers

Only 100 of 281 total aligned reads displayed.

AACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTC  >  NC_000913_3_hsa_pgi/257758‑258051
                                                                                                                                                     |                                                                                                                                                
   gCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagt                                                                                                                                               <  2:217815‑M1/150‑4 (MQ=255)
           tAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagat                                                                                                                                       >  1:3144402‑M1/1‑139 (MQ=255)
           tAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagat                                                                                                                                       >  2:3807311‑M1/1‑139 (MQ=255)
            aaaaaTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagata                                                                                                                                      >  2:410545‑M1/1‑138 (MQ=255)
                  ttGCTAAATTTTTCCAATTTTGTAAAACAGTTGAATCACAACAGGAGATAGCAATGAAGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat                                                                                                                                <  1:1425380‑M1/150‑19 (MQ=255)
                     cTAAATTTTGCAAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagttaatcgattct                                                                                                                             <  1:2976882‑M1/150‑22 (MQ=255)
                          ttttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                        <  1:623042‑M1/150‑27 (MQ=255)
                          ttttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                        <  1:2632542‑M1/150‑27 (MQ=255)
                          ttttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                        <  2:2838759‑M1/150‑27 (MQ=255)
                          ttttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGAGCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc                                                                                                                        <  2:2217396‑M1/150‑27 (MQ=255)
                           tttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTTGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCTTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                       <  2:1176623‑M1/150‑28 (MQ=255)
                           tttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAATATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                       >  1:3717427‑M1/1‑123 (MQ=255)
                           tttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCCCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                       >  2:518907‑M1/1‑123 (MQ=255)
                           tttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcg                                                                                                                       <  1:3374523‑M1/150‑28 (MQ=255)
                            ttGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGTAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcga                                                                                                                      <  2:3819126‑M1/150‑29 (MQ=255)
                             tGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgat                                                                                                                     <  1:1813126‑M1/150‑30 (MQ=255)
                             tGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgat                                                                                                                     >  1:2169069‑M1/1‑121 (MQ=255)
                              gCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCAGTATATTCGTGAAGGTAagtgcaaagataatcgattgtttttcgatt                                                                                                                    >  1:3298805‑M1/1‑120 (MQ=255)
                                  aTTTGGTAAAAGAGTTGCATAACAACAGTAGATAGCAATGACGTTACCGAGTTGACACCCGAAGAGCATATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct                                                                                                                <  1:2581006‑M1/150‑35 (MQ=255)
                                  aTTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct                                                                                                                <  2:594466‑M1/150‑35 (MQ=255)
                                     tGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc                                                                                                             <  1:2551869‑M1/150‑38 (MQ=255)
                                     tGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggc                                                                                                             >  2:2537820‑M1/1‑113 (MQ=255)
                                      ggTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCAGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaacataaacgattctttttcgattgactggct                                                                                                            >  1:1574741‑M1/1‑112 (MQ=255)
                                       gTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctg                                                                                                           >  2:1690094‑M1/1‑111 (MQ=255)
                                        tAAAACAGTTGCATCACAACAGGGGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgta                                                                                                         <  2:2936954‑M1/150‑42 (MQ=255)
                                        tAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACCCCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt                                                                                                          >  1:2459713‑M1/1‑110 (MQ=255)
                                        tAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt                                                                                                          >  1:2475107‑M1/1‑110 (MQ=255)
                                        tAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt                                                                                                          <  2:1227836‑M1/150‑41 (MQ=255)
                                         aaaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtt                                                                                                         >  2:2631706‑M1/1‑109 (MQ=255)
                                         aaaaCAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgta                                                                                                         >  1:126698‑M1/1‑109 (MQ=255)
                                             cAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg                                                                                                     >  1:2823952‑M1/1‑105 (MQ=255)
                                             cAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcg                                                                                                     >  2:3910867‑M1/1‑105 (MQ=255)
                                               gTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtc                                                                                                   <  2:2984629‑M1/150‑48 (MQ=255)
                                                ttGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtca                                                                                                  >  1:3186543‑M1/1‑102 (MQ=255)
                                                 tGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaa                                                                                                 <  1:4067175‑M1/150‑50 (MQ=255)
                                                     tCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtg                                                                                             >  1:1755110‑M1/1‑97 (MQ=255)
                                                     tCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtg                                                                                             <  1:4134281‑M1/150‑54 (MQ=255)
                                                      cacaACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtga                                                                                            <  2:3067384‑M1/150‑55 (MQ=255)
                                                      cacaACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtga                                                                                            <  1:2369014‑M1/150‑55 (MQ=255)
                                                           caGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccg                                                                                       <  1:2085549‑M1/150‑60 (MQ=255)
                                                           caGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGGGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccg                                                                                       >  2:1827971‑M1/1‑91 (MQ=255)
                                                                gaTAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcacc                                                                                  <  1:554430‑M1/150‑65 (MQ=255)
                                                                   aGCAATGACGTTACCGAGTGGACACCCGAAGAGCATATTGAGCAAAAAATTTACCGCACTAGGCGCGTATATTCGTGATGGTAcgtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgga                                                                               <  2:659216‑M1/150‑68 (MQ=255)
                                                                    tcaATGACGTTACCGACTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa                                                                              >  1:3010909‑M1/2‑82 (MQ=255)
                                                                    gCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatcagtcaacgtgaaaccggcaccggaa                                                                              >  2:969714‑M1/1‑82 (MQ=255)
                                                                    gCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggatgtatgcgtcaacgtgaaaccggcacctcaa                                                                              >  2:2723734‑M1/1‑82 (MQ=255)
                                                                      aaTGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagt                                                                            <  1:3450051‑M1/150‑71 (MQ=255)
                                                                           cGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtg                                                                       <  2:3420846‑M1/150‑76 (MQ=255)
                                                                               aCCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgagtgtctggctgtatgcgtcaacgtgaaaccgtcaccggaagtgcgtgaatt                                                                   >  2:2888685‑M1/1‑71 (MQ=255)
                                                                                 cGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattct                                                                 >  1:3857913‑M1/1‑69 (MQ=255)
                                                                                    gttgacaCCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggg                                                              <  2:1946937‑M1/147‑85 (MQ=255)
                                                                                    gTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgactggctgtatgagtcaacgtgaaaccggcaccggaagtgcgtgaattctggg                                                              >  2:1762657‑M1/1‑66 (MQ=255)
                                                                                      ggACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggc                                                            <  1:1534410‑M1/150‑87 (MQ=255)
                                                                                        acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctg                                                          <  1:42756‑M1/150‑89 (MQ=255)
                                                                                         cacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctgg                                                         >  2:56858‑M1/1‑61 (MQ=255)
                                                                                           cccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtg                                                       >  2:3595292‑M1/1‑59 (MQ=255)
                                                                                           cccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtg                                                       <  2:126698‑M1/150‑92 (MQ=255)
                                                                                           cccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtg                                                       >  2:794627‑M1/1‑59 (MQ=255)
                                                                                            ccGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtgg                                                      <  2:1462487‑M1/150‑93 (MQ=255)
                                                                                                tgagcAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgg                                                  <  2:2684915‑M1/149‑97 (MQ=255)
                                                                                                cgagcTGATTGATCAAAAAATGTCCCGCACTAGGCCCGTATATTCGTGAAGTTAagggcaaagataatcgattctttttcgattgtctggctgtatgcggcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgg                                                  <  1:3570987‑M1/149‑97 (MQ=255)
                                                                                                agagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgg                                                  <  1:3264017‑M1/150‑97 (MQ=255)
                                                                                                 gagCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatgga                                                 <  2:2459713‑M1/150‑98 (MQ=255)
                                                                                                  atcagATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggag                                                <  2:2783113‑M1/148‑99 (MQ=255)
                                                                                                         tGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctgggggatggagctggaag                                         <  1:518907‑M1/150‑106 (MQ=255)
                                                                                                          gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagc                                        >  1:2752881‑M1/1‑44 (MQ=255)
                                                                                                          gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagc                                        >  1:1129157‑M1/1‑44 (MQ=255)
                                                                                                          gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattcttattcgcttgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagc                                        >  1:1674483‑M1/1‑44 (MQ=255)
                                                                                                          gATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatagattctttttcgatagtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaatactggggctggtggatggagctggaagc                                        >  2:440009‑M1/1‑44 (MQ=255)
                                                                                                             cAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggtaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                     >  2:163034‑M1/1‑41 (MQ=255)
                                                                                                             cAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgca                                     <  1:4077857‑M1/150‑110 (MQ=255)
                                                                                                             cAAAAAAATTACCGCACTACGCCCGTATATGCGCGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagggcgtgaattctggggctggtggatggagctggaagcgca                                     <  1:1039438‑M1/150‑110 (MQ=255)
                                                                                                              aaaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggatctggaagcgcag                                    >  2:399720‑M1/1‑40 (MQ=255)
                                                                                                              aaaaaaTTAACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcag                                    >  1:49831‑M1/1‑40 (MQ=255)
                                                                                                               aaaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtatggatgtatgcttcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctgtaagcgcagg                                   >  1:190299‑M1/1‑39 (MQ=255)
                                                                                                                aaaaTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtcaaaccggcaccgcaagtgcgtgaattctggggctggtggatggagctggaagcgcagga                                  >  1:2449557‑M1/1‑38 (MQ=255)
                                                                                                                   aTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatc                               <  1:1640360‑M1/150‑116 (MQ=255)
                                                                                                                   aTTTACCGCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattggctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatc                               <  2:1635010‑M1/150‑116 (MQ=255)
                                                                                                                        ccGCACTAGGCGCGTATATTCGTGAAGGTAagtgcaaagataatcgattgtttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggatggtggatggagctggaagcgcaggaagcccgtt                          >  1:1408846‑M1/1‑30 (MQ=255)
                                                                                                                          gCACTAGGCCCGTATATTCGTGAAGTTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttt                        <  1:1187100‑M1/150‑123 (MQ=255)
                                                                                                                          gCACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttt                        >  2:3342994‑M1/1‑28 (MQ=255)
                                                                                                                           cACTAGGCCCGTATATTCGTGAAGGTAagtgcaatgataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttta                       <  1:841103‑M1/150‑124 (MQ=255)
                                                                                                                           cACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttta                       >  2:1097451‑M1/1‑27 (MQ=255)
                                                                                                                           cACTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgtttta                       <  1:2874380‑M1/150‑124 (MQ=255)
                                                                                                                            aCTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgcttctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac                      >  1:2321569‑M1/1‑26 (MQ=255)
                                                                                                                             cTAGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacc                     <  2:2619290‑M1/150‑126 (MQ=255)
                                                                                                                               aGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta                   <  2:3010909‑M1/150‑128 (MQ=255)
                                                                                                                                ggCCCGTATATTCGTGAAGGTAagtgcaaagatactcgattctttttcgattgtctggctgtatgcgtcaacgtgacaccggccccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctac                  <  1:2934180‑M1/150‑129 (MQ=255)
                                                                                                                                ggCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctac                  >  1:1084405‑M1/1‑22 (MQ=255)
                                                                                                                                   ccGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgt                           >  1:1701008‑M1/1‑19 (MQ=255)
                                                                                                                                      tataTTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggatgtatgcgtcaacgtgaaacaggcaccggaagtgcgtgaattctggggatggtggatggagctggatgcgcaggaatcccgttttaactacagttac            >  1:2013596‑M1/1‑16 (MQ=255)
                                                                                                                                       atatTCGTGAAGGTAagtgcaaagatactcgattctttttcgattgtctggctgtctgcgtcaacgtgaacccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacc           <  2:3717427‑M1/150‑136 (MQ=255)
                                                                                                                                       atatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacc           <  2:3544476‑M1/150‑136 (MQ=255)
                                                                                                                                       atatTCGTGAAGGTAagtgcaaagataatcgattctttttcgagtgtctggctgtatgcgtcaacgtgaaaccggcggcggttgtgcgtgaattctggggctggtggagggagctggaagcgcaggaatcccgttttacctacagttacc           >  2:233343‑M1/1‑15 (MQ=255)
                                                                                                                                        tatTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttacca          <  1:1565581‑M1/150‑137 (MQ=255)
                                                                                                                                         atTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccag         <  2:1572651‑M1/150‑138 (MQ=255)
                                                                                                                                             gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggcgctggaagcgcaggaatcccgttttacctacagttaccagtttg     >  2:2999874‑M1/1‑9 (MQ=255)
                                                                                                                                             gTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttg     <  2:3206544‑M1/150‑142 (MQ=255)
                                                                                                                                               taagGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggt   <  2:3144402‑M1/149‑144 (MQ=255)
                                                                                                                                                aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagttaccagtttggtc  <  2:2855941‑M1/150‑145 (MQ=255)
                                                                                                                                                     |                                                                                                                                                
AACGCTTGTGTTAAAAATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGGTTATGCCGCTC  >  NC_000913_3_hsa_pgi/257758‑258051

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.