mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913_3_hsa_pgi | 4,296,088 | 0 | C | T | 35.2% | 58.1 / 62.4 | 73 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate:proton symporter/Sel1 family TPR‑like repeat protein |
| * | NC_000913_3_hsa_pgi | 526,792 | 0 | A | C | 26.7% | 120.5 / 49.2 | 90 | S1178R (AGC→CGC) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_hsa_pgi | 4,235,461 | 0 | A | C | 26.3% | 133.8 / 70.8 | 118 | intergenic (‑2228/‑473) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein |
| * | NC_000913_3_hsa_pgi | 4,235,467 | 0 | T | G | 25.6% | 159.1 / 65.2 | 118 | intergenic (‑2234/‑467) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein |
| * | NC_000913_3_hsa_pgi | 4,235,460 | 0 | A | G | 24.8% | 182.3 / 71.5 | 118 | intergenic (‑2227/‑474) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein |
| * | NC_000913_3_hsa_pgi | 526,800 | 0 | A | G | 24.7% | 131.7 / 44.4 | 81 | E1180E (GAA→GAG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_hsa_pgi | 526,796 | 0 | C | G | 24.1% | 153.8 / 50.0 | 84 | A1179G (GCG→GGG) | rhsD | Rhs protein with DUF4329 family putative toxin domain; putative neighboring cell growth inhibitor |
| * | NC_000913_3_hsa_pgi | 4,235,468 | 0 | C | A | 23.1% | 181.8 / 63.7 | 121 | intergenic (‑2235/‑466) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein |
| * | NC_000913_3_hsa_pgi | 1,865,682 | 0 | G | C | 20.0% | 165.9 / 36.8 | 80 | intergenic (‑46/+44) | yeaE/mipA | aldo‑keto reductase, methylglyoxal to acetol, NADPH‑dependent/scaffolding protein for murein synthesizing machinery |
| Marginal new junction evidence (lowest skew 10 of 544 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913_3_hsa_pgi | 4227543 = | 1333 (14.510) | 68 (0.780) | 27/284 | 3.4 | 5.2% | intergenic (+32/‑188) | metH/yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| ? | NC_000913_3_hsa_pgi | 4227568 = | 1225 (13.990) | intergenic (+57/‑163) | metH/yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4219847 | 1537 (16.730) | 59 (0.700) | 23/274 | 4.0 | 4.0% | coding (1252/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase |
| ? | NC_000913_3_hsa_pgi | = 4219854 | 1398 (16.560) | coding (1259/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase | |||||
| * | ? | NC_000913_3_hsa_pgi | 4233518 = | 1199 (13.050) | 46 (0.560) | 21/266 | 4.3 | 4.2% | intergenic (‑285/‑2416) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein |
| ? | NC_000913_3_hsa_pgi | 4233534 = | 1037 (12.650) | intergenic (‑301/‑2400) | lysC/yjbE | lysine‑sensitive aspartokinase 3/extracellular polysaccharide production threonine‑rich protein | |||||
| * | ? | NC_000913_3_hsa_pgi | 4224758 = | 1204 (13.100) | 43 (0.490) | 20/286 | 4.9 | 3.6% | coding (931/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| ? | NC_000913_3_hsa_pgi | 4224775 = | 1173 (13.310) | coding (948/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4222777 | 1351 (14.700) | 65 (0.740) | 20/284 | 4.9 | 4.9% | intergenic (‑290/+27) | arpA/iclR | ankyrin repeat protein/transcriptional repressor |
| ? | NC_000913_3_hsa_pgi | = 4222785 | 1232 (14.070) | intergenic (‑298/+19) | arpA/iclR | ankyrin repeat protein/transcriptional repressor | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4227549 | 1332 (14.500) | 56 (0.640) | 19/284 | 5.1 | 4.2% | intergenic (+38/‑182) | metH/yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter |
| ? | NC_000913_3_hsa_pgi | = 4227560 | 1280 (14.620) | intergenic (+49/‑171) | metH/yjbB | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent/putative Na+/Pi‑cotransporter | |||||
| * | ? | NC_000913_3_hsa_pgi | 4227808 = | 1472 (16.020) | 59 (0.660) | 18/288 | 5.5 | 4.0% | coding (78/1632 nt) | yjbB | putative Na+/Pi‑cotransporter |
| ? | NC_000913_3_hsa_pgi | 4227825 = | 1444 (16.270) | coding (95/1632 nt) | yjbB | putative Na+/Pi‑cotransporter | |||||
| * | ? | NC_000913_3_hsa_pgi | 4226590 = | 1355 (14.750) | 27 (0.310) | 16/284 | 6.0 | 2.1% | coding (2763/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| ? | NC_000913_3_hsa_pgi | 4226621 = | 1275 (14.570) | coding (2794/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent | |||||
| * | ? | NC_000913_3_hsa_pgi | 4219836 = | 1516 (16.500) | 24 (0.280) | 15/274 | 6.0 | 1.7% | coding (1241/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase |
| ? | NC_000913_3_hsa_pgi | 4219867 = | 1399 (16.570) | coding (1272/1737 nt) | aceK | isocitrate dehydrogenase kinase/phosphatase | |||||
| * | ? | NC_000913_3_hsa_pgi | = 4225769 | 1422 (15.480) | 48 (0.540) | 16/288 | 6.1 | 3.4% | coding (1942/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent |
| ? | NC_000913_3_hsa_pgi | = 4225786 | 1367 (15.400) | coding (1959/3684 nt) | metH | homocysteine‑N5‑methyltetrahydrofolate transmethylase, B12‑dependent | |||||