New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi = 1028822114 (1.130)13 (0.130) 11/286 8.5 10.7% coding (1148/1191 nt) rlmI 23S rRNA m(5)C1962 methyltransferase, SAM‑dependent
?NC_000913_3_hsa_pgi = 1028857 108 (1.110)coding (1113/1191 nt) rlmI 23S rRNA m(5)C1962 methyltransferase, SAM‑dependent
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TAACAGGGAATGGCGGACCTGCTGGCCGATACCGAATTTGCTGGCAATCATAGTCACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCAGATATAGCCCTTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_pgi/1028671‑1028822
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcc‑gTCAGGCAGCCGATCATCCGGTGATCGCTACCTATCCGGAAGGGCTATATCTGAAAGGGTTTGCCTGTCGCGTCATGTAACTTGAAATGTGGAATTTTACCCTTATATCAAAGGTAAAGATTTCCCGGGAGGTGACTATGATTGCCAGC  <  NC_000913_3_hsa_pgi/1028857‑1028710
                                                                                                                                                                                                                                                                                                             
TAACAGGGAATGGCGGACCTGCTGGCCGATACCGAATTTGCTGGCAATCATAGTCACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCAGATATAGCCCTT                                                                                                                                                          >  2:1164147/1‑149
TAACAGGGAATGGCGGACCTGCTGGCCGATACCGAATTTGCTGGCAATCAAAGTCACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGTAAACCCTTTCAGATATAGCCCTT                                                                                                                                                          >  1:891396/1‑149
 AACAGGGAATGGCGGACCTGCTGGCCGATACCGAATTTGCTGGCAATCATAGTCACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCAGATATAGCCCTTC                                                                                                                                                         <  1:28761/149‑1
     GGGAATGGCGGACCTGCTGGCCGATACCGAATTTGCTGGCAATCATAGTCACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCAGATATTGCCCTTCCGTt                                                                                                                                                    >  1:346112/1‑148
             CGGACCTGCTGGCCGATACCGAATTTGCTGGCAATCATAGTCACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCAGATATAGCCCTTCCGTCAGGCAGCC                                                                                                                                            >  1:1395075/1‑149
                                  AATTTGCTGGCAATCATAGTCACCTCCCGGGAAATCTTTTCCTTTGATATAAGGGTAAAAATCCACATATCAAGTTACATGACGAGACAGGCAAACCCTTTCAGATGTAGCCCTTCCGGTTAGGCAGCCTATCATCCGGTGATCGCTAC                                                                                                                        <  2:150530/149‑1
                                      TGCTGGCAATCATAGTCACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCAGATATAGCCCATCCGTCAGGCAGCCGATCATCCGGTGATCGCTACCTATC                                                                                                                   <  2:113603/149‑1
                                      TGCAGGCAATCATAGTCACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCAGATATAGCCCTTCCGGATAGGCAGCCGATCATCCGGTGATCGCTACCTAT                                                                                                                    <  2:1287525/149‑1
                                       GCTGTCAATCATAGTCACCTCCCGGGAAATCTTTACCTTTCATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCATATATAGACCTTCCGTCAGGCAGCCGATCATCCGGTTATCGCTACCTATCC                                                                                                                  <  2:927177/149‑1
                                       GCTGGCAATCATAGTCACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCAGATATAGCCCTTCCGGATAGGCAGCCGATCATCCGGTGATCGCTACCTATC                                                                                                                   <  2:841055/149‑1
                                          GGCAATCATAGTCACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCAGATATAGCCCTTCCGTCAGGCAGCCGATCATCCGGTGATCGCTACCTATCCGGA                                                                                                               <  1:8576/149‑1
                                          GGCAATCATAGTCACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCAGATATAGCCCTTCCGTCAGGCAGCCGATCATCCGGTGATCGCTACCTATCCGGA                                                                                                               <  2:1395075/149‑1
                                             AATCATAGTCACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCAGATATAGCCCTTCCGTCAGGCAGCCGATCATCCGGTGATCGCTACCTATCCGGAAGG                                                                                                            <  1:655626/149‑1
                                              ATCATAGTCACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCAGATATAGCCCTTCCGTCAGGCAGCCGATCATCCGGTGATCGCTACCTATCCGGAAGGG                                                                                                           <  1:1199449/149‑1
                                                       ACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCAGATATAGCCCTTCCGTCAGGCAGCCGATCATCCGGTGATCGCTACCT                                                                                                                      <  1:768383/129‑1
                                                       ACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCAGATATAGCCCTTCCGTCAGGCAGCCGATCATCCGGTGATCGCTACCT                                                                                                                      >  2:768383/1‑129
                                                                                                                                                   TTCCGTCAGGCAGCCGATCATCCGGTGATCGCTACCTATCCGGAAGGGCTATATCTGAAAGGGTTTGCCTGTCGCGTCATGTAACTTGAAATGTGGAATTTTACCCTTATATCAAAGGTAAAGATTTCCCGGGAGGTGACTATGATTGC      <  1:36481/149‑1
                                                                                                                                                     CCGTCAGGCAGCCGATCATCCGGTGATCGCTACCTATCCGGAAGGGCTATATCTGAAAGGGTTTGCCTGTCGCGTCATGTAACTTGAAATGTGGAATTTTACCCTTATATCAAAGGTAAAGATTTCCCGGGAGGTGACTATGATTGCCA    <  1:486955/149‑1
                                                                                                                                                     CCGTCAGGCAGCCGATCATCCGGTGATCGCTACCTATCCGGAAGGGCTATATCTGAAAGGGTTTGCCTGTCGCGTCATGTAACTTGAAATGTGGAATTTTACCCTTATATCAAAGGTAAAGATTTCCCGGGAGGTGACTATGATTGCCA    <  2:480054/149‑1
                                                                                                                                                        GTCAGGCAGCCGATCATCCGGTGATCGCTACCTATCCGGAAGGGCTATATCTGAAAGGGTTTGCCTGTCGCGTCATGTACCTTGAAATGTGGAATTTTACCCTTATATCAAAGGTAAAGATTTCCCGGGAGGTGACTATGATTGCCAGC  >  1:1196002/1‑149
                                                                                                                                                        GTCAGGCAGCCGATCATCCGGTGATCGCTACCTATCCGGAAGGGCTATATCTGAAAGGGTTTGCCTGTCGCGTCATGTAACTTGAAATGTGGAATTTTACACTTATATCAAAGGTAAAGATTTCCCGGGAGGTGACTATGATTGCAAGC  >  1:402544/1‑149
                                                                                                                                                                                                                                                                                                             
TAACAGGGAATGGCGGACCTGCTGGCCGATACCGAATTTGCTGGCAATCATAGTCACCTCCCGGGAAATCTTTACCTTTGATATAAGGGTAAAATTCCACATTTCAAGTTACATGACGCGACAGGCAAACCCTTTCAGATATAGCCCTTCCG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  >  NC_000913_3_hsa_pgi/1028671‑1028822
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ttcc‑gTCAGGCAGCCGATCATCCGGTGATCGCTACCTATCCGGAAGGGCTATATCTGAAAGGGTTTGCCTGTCGCGTCATGTAACTTGAAATGTGGAATTTTACCCTTATATCAAAGGTAAAGATTTCCCGGGAGGTGACTATGATTGCCAGC  <  NC_000913_3_hsa_pgi/1028857‑1028710

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.