New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_pgi	= 2024596	39 (1.110)	3 (0.090)	3/274	NT	7.6%	intergenic (+5/+39)	rcsA/dsrB	transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein
	?	NC_000913_3_hsa_pgi	= 2024624	34 (0.970)					intergenic (+33/+11)	rcsA/dsrB	transcriptional regulator of colanic acid capsular biosynthesis/uncharacterized protein

ATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCAGTAC  >  NC_000913_3_hsa_pgi/2024477‑2024763                                                                                                                                                    |                                                                                                                                            aTCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGc                                                                                                                                            >  2:528437/1‑149 (MQ=255)    tcATAAAGATAATATTAAACTGAAGATGAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAACGTTACTAATAGTATTTTTGTCAACATGCGCTAACACACTCTTACTAGCGGTGTCCCCCCAGTCACGCTGa                                                                                                                                         <  2:649394/148‑1 (MQ=255)    gCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACAACCTCTATCACAGTCTGCCTGGTGGTTTCCCACCAGCCAGGCTGa                                                                                                                                         >  1:348765/1‑149 (MQ=255)          aGGTAATACTAAACGCAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGa                                                                                                                                   <  1:12800/149‑1 (MQ=255)                               cAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACaaa                                                                                                              <  2:187287/149‑1 (MQ=255)                                aaaaCGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTGTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAg                                                                                                             >  1:588251/1‑149 (MQ=255)                                 aaaCGCATAATAAACAGTGTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTACCACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGa                                                                                                            <  2:346293/149‑1 (MQ=255)                                        taataaACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGACTACGATTACTCTGCTTTCTCCCCACAGATCCCgcc                                                                                                     >  2:11186/1‑147 (MQ=255)                                        taataaACAGGTTATCTACCATGTCGCCCGAATGACGTATGAGCGGACGAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTc                                                                                                     <  1:456183/149‑1 (MQ=255)                                              aCAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATg                                                                                               <  2:88836/149‑1 (MQ=255)                                                 ggTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCAACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATCCCGTCCTGATGccc                                                                                            >  1:419835/1‑149 (MQ=255)                                                    tATCTACCATTTCGTCCGACTGACGGATAATGTGACTAATGTTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCATCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGc                                                                                         <  2:554878/149‑1 (MQ=255)                                                    tATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGc                                                                                         <  1:528437/149‑1 (MQ=255)                                                                 gtcCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCGTGATGCCCTGCTTCATTAAAGAAc                                                                            >  2:372787/1‑149 (MQ=255)                                                                  tcCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTtctc                                                                                                                    <  2:552038/108‑1 (MQ=255)                                                                  tcCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTtctc                                                                                                                    >  1:552038/1‑108 (MQ=255)                                                                     gACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGa                                                                        >  2:356658/1‑149 (MQ=255)                                                                       cTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATg                                                                      <  1:137033/149‑1 (MQ=255)                                                                          aCGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCg                                                                   >  1:464972/1‑149 (MQ=255)                                                                              aTAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTAAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCg                                                               >  1:229886/1‑149 (MQ=255)                                                                                aaTGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGTTTCATTAAAGAACCAGATGCCGAGCggg                                                             <  1:39451/149‑1 (MQ=255)                                                                                aaTGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTAAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCggg                                                             <  2:229886/149‑1 (MQ=255)                                                                                  tgtgACTAATGTTATTTTTGTCAACATGCGCTAACACATTCTGACTTGGGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTa                                                           <  1:540085/149‑1 (MQ=255)                                                                                    tgACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGt                                                         >  1:248615/1‑149 (MQ=255)                                                                                      aCTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTCGTCt                                                       >  1:315789/1‑149 (MQ=255)                                                                                                         aCATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGatgtgttagcgcatgttgacaaaaataccattagtcacattatccgtcagtcggacgacatggtagataacctgt                                                                  <  1:217261‑M2/119‑76 (MQ=255)                                                                                                         aCATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGatgtgttagcgcatgttgacaaaaataccattagtcacattatccgtcagtcggacgacatggtagataacctgt                                                                  >  2:217261‑M2/1‑44 (MQ=255)                                                                                                          cATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGATGAATAGGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACAAGATGCCAGGCGGGTAATCTTCCAGCGAGACCAGGtcggt                                   >  2:635323/1‑145 (MQ=255)                                                                                                                  aaCACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCtt                           <  1:208571/149‑1 (MQ=255)                                                                                                                  aaCACATTCTGACCGGTGGTCTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCtt                           <  1:660/149‑1 (MQ=255)                                                                                                                     acaTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAGACCAGGTACATTGTGCCTTCAc                        >  1:43950/1‑149 (MQ=255)                                                                                                                     acaTTCTGACTGGTGGTTTCCCACCAGGCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACTGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGGAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCAc                        >  1:41318/1‑149 (MQ=255)                                                                                                                       aTTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTATGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAATCTTCCAGCGAAACCAGGTACATTGTGCCTTCACtg                      >  1:525952/1‑148 (MQ=255)                                                                                                                        ttCTGACTGGTGGTGTCCCACCAGACAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTaa                     >  1:575692/1‑149 (MQ=255)                                                                                                                           tGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACTAGGTACATTGTGCCTTCACTAAAct                  >  2:516658/1‑149 (MQ=255)                                                                                                                              cgggtggtTTCCCACCGGTCAGGCTGAATAAGATTACTCTGCCTTTTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAActcct               <  2:564891/147‑1 (MQ=255)                                                                                                                                       tCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCa      <  1:641366/149‑1 (MQ=255)                                                                                                                                       tCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCACTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCa      <  2:305757/149‑1 (MQ=255)                                                                                                                                       tCCCACCAGACAGGCTGAATAAGATTACACCGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCa      <  1:455566/149‑1 (MQ=255)                                                                                                                                           accaGTCACGatgtggtagcacaagttgacaaaaataccattagtcacattatccgtccgtcggacgacatggtagacaacctgtttattatgcgttttgatcttacgtttaatattacctttatgcgatgcaacggtcttggctttga  >  2:271392‑M2/1‑10 (MQ=255)                                                                                                                                                    |                                                                                                                                            ATCGCATAAAGGTAATATTAAACGTAAGATCAAAACGCATAATAAACAGGTTATCTACCATGTCGTCCGACTGACGGATAATGTGACTAATGGTATTTTTGTCAACATGCGCTAACACATTCTGACTGGTGGTTTCCCACCAGTCAGGCTGAATAAGATTACTCTGCTTTCTCCACAAAGATACCGTCCTGATGCCCTGCTTCATTAAAGAACCAGATGCCGAGCGGGTAGTCTTCCAGCGAAACCAGGTACATTGTGCCTTCACTAAACTCCTCAACTGCCAGTAC  >  NC_000913_3_hsa_pgi/2024477‑2024763

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.