BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	NC_000913_3_hsa_pgi	1,978,503	Δ776 bp		insB1–insA	insB1, insA

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NC_000913_3_hsa_pgi	1978503–1979270	1979278	9–776	229 [0]	[0] 224	insB1–insA	insB1,insA

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_pgi	= 1978502	0 (0.000)	199 (0.890)	105/178	0.1	100%	intergenic (‑305/+16)	flhD/insB1	flagellar class II regulon transcriptional activator, with FlhC/IS1 transposase B
*	?	NC_000913_3_hsa_pgi	1979279 =	0 (0.000)	199 (0.890)	105/178	0.1	100%	intergenic (‑64/‑474)	insA/uspC	IS1 repressor TnpA/universal stress protein

Only 100 of 229 total aligned reads displayed.

CTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCG  >  NC_000913_3_hsa_pgi/1978403‑1978601

cTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                                                     <  1:3638897‑M1/100‑1 (MQ=255)

cTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                                                     >  2:5234425‑M1/1‑100 (MQ=255)

 tGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCCATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                                                     >  2:5109455‑M1/1‑99 (MQ=255)

  gTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                                                   >  2:1189199‑M1/1‑98 (MQ=255)

   tACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGta                                                                                                   <  1:4520935‑M1/99‑3 (MQ=255)

    aCTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat                                                                                                  >  1:1704171‑M1/1‑96 (MQ=255)

     cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtata                                                                                                 <  1:2659456‑M1/99‑5 (MQ=255)

     cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat                                                                                                  >  2:941087‑M1/1‑95 (MQ=255)

     cTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtat                                                                                                  >  2:2432163‑M1/1‑95 (MQ=255)

       cGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                              >  2:1634724‑M1/1‑93 (MQ=255)

        gTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagt                                                                                              <  2:530055‑M1/99‑8 (MQ=255)

          cACTACACGCACATACAACGGAGGGGGGCAGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATG                                                                                                     <  2:2951202‑M1/90‑1 (MQ=255)

           aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcata                                                                                          >  1:5359041‑M1/1‑89 (MQ=255)

           aCTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcat                                                                                           <  2:5546621‑M1/99‑11 (MQ=255)

            cTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAACGtataagtcatac                                                                                         >  1:5752758‑M1/1‑88 (MQ=255)

             tACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact                                                                                        >  2:3033866‑M1/1‑87 (MQ=255)

               cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                      >  2:3638395‑M1/1‑85 (MQ=255)

               cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttt                                                                                      >  1:1381820‑M1/1‑85 (MQ=255)

               cacGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatact                                                                                        <  2:2290599‑M1/98‑14 (MQ=255)

                 cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                    >  2:2053247‑M1/1‑83 (MQ=255)

                 cGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttg                                                                                    >  1:5238910‑M1/1‑83 (MQ=255)

                      ntaCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatactcttgttttg                                                                               >  2:5684489‑M1/2‑78 (MQ=255)

                       tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                              >  1:2012616‑M1/1‑77 (MQ=255)

                       tACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttg                                                                               >  1:1853878‑M1/1‑77 (MQ=255)

                        aCAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                             >  1:3143463‑M1/1‑76 (MQ=255)

                         cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggn                                                                             <  2:2283860‑M1/99‑25 (MQ=255)

                         cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                            >  2:2613727‑M1/1‑75 (MQ=255)

                         cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggt                                                                            >  2:2761366‑M1/1‑75 (MQ=255)

                         cAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttggg                                                                             <  1:4408664‑M1/99‑25 (MQ=255)

                           aCGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtg                                                                           >  1:5987310‑M1/1‑73 (MQ=255)

                                ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc                                                                     <  2:1063145‑M1/100‑33 (MQ=255)

                                ggggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc                                                                     <  2:1065747‑M1/100‑33 (MQ=255)

                                 gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc                                                                     <  1:4758546‑M1/99‑33 (MQ=255)

                                 gggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc                                                                     <  2:5889854‑M1/99‑33 (MQ=255)

                                  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                   <  1:1235450‑M1/100‑35 (MQ=255)

                                  ggggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaa                                                                   >  2:3707896‑M1/1‑66 (MQ=255)

                                    ggCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatc                                                                 <  1:1636206‑M1/100‑37 (MQ=255)

                                     gCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttc                                                                     <  2:3933714‑M1/95‑33 (MQ=255)

                                      cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                               <  1:1081765‑M1/100‑39 (MQ=255)

                                      cTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctg                                                               >  2:317760‑M1/1‑62 (MQ=255)

                                       tGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                              >  2:3314987‑M1/1‑61 (MQ=255)

                                       tGCGATTTTCAATAATGCGTGATGCACATCACACAAAACGCTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtctatttcaatctgt                                                              >  1:5503807‑M1/1‑61 (MQ=255)

                                         cGATTTTCAATAATGCGTGATGCAGATCACACAAAGCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                              <  1:4977901‑M1/98‑40 (MQ=255)

                                         cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgtt                                                             >  2:2580388‑M1/1‑59 (MQ=255)

                                         cGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgt                                                              <  2:3153177‑M1/98‑40 (MQ=255)

                                           aTTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaa                                                          <  1:709485‑M1/100‑44 (MQ=255)

                                              ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                        <  1:5543851‑M1/99‑46 (MQ=255)

                                              ttCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaa                                                        <  2:5404602‑M1/99‑46 (MQ=255)

                                               tCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaag                                                       <  1:10000‑M1/99‑47 (MQ=255)

                                                cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtt                                                     >  2:4718925‑M1/1‑52 (MQ=255)

                                                cAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtt                                                     >  2:4122951‑M1/1‑52 (MQ=255)

                                                  ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                   >  2:2806376‑M1/1‑50 (MQ=255)

                                                  ataatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttt                                                   <  2:4517744‑M1/100‑51 (MQ=255)

                                                    aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                 >  1:2964244‑M1/1‑48 (MQ=255)

                                                    aatGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttc                                                 >  2:5337429‑M1/1‑48 (MQ=255)

                                                        cGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgcn                                              <  1:5692961‑M1/99‑56 (MQ=255)

                                                         gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctac                                            >  1:3463912‑M1/1‑43 (MQ=255)

                                                         gTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtaattcaatctgttaaaaagtttttcgctac                                            >  1:94652‑M1/1‑43 (MQ=255)

                                                          tGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctac                                            <  2:3730774‑M1/99‑58 (MQ=255)

                                                              gCAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgg                                                                              <  1:4616213‑M1/61‑24 (MQ=255)

                                                               cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctag                                       >  1:2032454‑M1/1‑37 (MQ=255)

                                                               cAGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctag                                       <  1:2559125‑M1/99‑63 (MQ=255)

                                                                aGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagca                                     <  1:269293‑M1/100‑65 (MQ=255)

                                                                aGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                      >  1:4176921‑M1/1‑36 (MQ=255)

                                                                aGATCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagc                                      <  2:306302‑M1/99‑64 (MQ=255)

                                                                  aTCACACAAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaag                                   <  1:2866726‑M1/100‑67 (MQ=255)

                                                                      cacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                                >  1:1507058‑M1/1‑30 (MQ=255)

                                                                      cacaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaa                                >  1:910368‑M1/1‑30 (MQ=255)

                                                                       acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaa                              <  1:4720609‑M1/100‑72 (MQ=255)

                                                                       acaAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaa                               >  1:2466020‑M1/1‑29 (MQ=255)

                                                                        caAAACACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgatagaaagaaaaaa                             <  2:4447181‑M1/100‑73 (MQ=255)

                                                                         aaaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaat                            <  1:2612159‑M1/100‑74 (MQ=255)

                                                                          aaaCACTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaat                            >  2:1285924‑M1/1‑26 (MQ=255)

                                                                            acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                         <  1:2167339‑M1/100‑77 (MQ=255)

                                                                            acacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaa                         <  1:3725505‑M1/100‑77 (MQ=255)

                                                                             cacTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                        <  1:3068237‑M1/100‑78 (MQ=255)

                                                                              acTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaac                       <  1:1439597‑M1/100‑79 (MQ=255)

                                                                              acTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                        >  2:350463‑M1/1‑22 (MQ=255)

                                                                               cTCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaa                        >  2:5116258‑M1/1‑21 (MQ=255)

                                                                                tCAATTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacag                     >  2:1335970‑M1/1‑20 (MQ=255)

                                                                                  aaTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacagga                   <  1:586417‑M1/100‑83 (MQ=255)

                                                                                   aTTACTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacag                     >  2:1880244‑M1/1‑17 (MQ=255)

                                                                                      aCTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaat                 >  1:3988377‑M1/1‑14 (MQ=255)

                                                                                       cTTAACATAAATGtataagtcatacttttgttttggttgtatttcaatctgttaaaaagtttttcgctatgctagcatgcaaaaatgaaagtggaataat              >  2:4755874‑M1/1‑13 (MQ=255)

                                                                                       cTTAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataat              >  2:3223743‑M1/1‑13 (MQ=255)

                                                                                         tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc             >  1:4765748‑M1/1‑11 (MQ=255)

                                                                                         tAACATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatc             >  2:1770220‑M1/1‑11 (MQ=255)

                                                                                          tacAGAAATGtattagacatacttctgttttgggtgtatttcaatctgttaaaaagtgtttcgctacgctagcaagcaaaaatgaaataggaataatcg            <  1:5022104‑M1/98‑90 (MQ=255)

                                                                                          aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagaaagcaaaaatgaaacaggaataatc             <  2:208758‑M1/98‑89 (MQ=255)

                                                                                          aaCATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgatagcaagaaaaaatgaaacaggaataatcg            <  2:4053687‑M1/99‑90 (MQ=255)

                                                                                            cATAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagttgttcgctacgctagcaagcaaaaatgaaacaggaataa               >  2:2845196‑M1/1‑8 (MQ=255)

                                                                                              tAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatg       >  2:778079‑M1/1‑6 (MQ=255)

                                                                                              tAAATGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgc                                          >  1:616893‑M1/1‑6 (MQ=255)

                                                                                              caaatGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcgaaaatgaaacaggaataatcgaaatg       <  1:4665796‑M1/99‑95 (MQ=255)

                                                                                               aaaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgct                                         <  2:616336‑M1/65‑61 (MQ=255)

                                                                                                aaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg      >  1:3491881‑M1/1‑4 (MQ=255)

                                                                                                aaTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgg      >  2:5093688‑M1/1‑4 (MQ=255)

                                                                                                 aTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga    <  1:1287040‑M1/100‑98 (MQ=255)

                                                                                                 aTGtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatggga    <  2:1558880‑M1/100‑98 (MQ=255)

                                                                                                   gtataagtcatacttttgttttgggtgtatttcaatctgttaaaaagtttttcgctacgctagcaagcaaaaatgaaacaggaataatcgaaatgggatg  >  2:1713738‑M1/1‑1 (MQ=255)

CTGTACTCGTCACTACACGCACATACAACGGAGGGGGGCTGCGATTTTCAATAATGCGTGATGCAGATCACACAAAACACTCAATTACTTAACATAAATGGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCG  >  NC_000913_3_hsa_pgi/1978403‑1978601

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 22 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`