New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi = 4249443NA (NA)29 (0.450) 22/266 2.6 NA noncoding (95/125 nt) REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913_3_hsa_pgi = 4249473 NA (NA)noncoding (125/125 nt) REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences REP316 (repetitive extragenic palindromic) element; contains 3 REP sequences

Only 100 of 1250 total aligned reads displayed.

CAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAA  >  NC_000913_3_hsa_pgi/4249294‑4249592
                                                                                                                                                     |                                                                                                                                                     
    gacgaGTGGACCTTCCGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGgccg                                                                                                                                                   <  1:547774‑M1/150‑5 (MQ=255)
     acgaGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGgccgg                                                                                                                                                  <  1:1090350‑M1/150‑6 (MQ=255)
            gACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGc                                                                                                                                           >  2:1103018/1‑150 (MQ=255)
             aCCTTCGGAGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCg                                                                                                                                          <  1:855501/150‑1 (MQ=255)
              ccTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGt                                                                                                                                         >  1:494770/1‑150 (MQ=255)
              ccTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGt                                                                                                                                         >  1:536355/1‑150 (MQ=255)
               cTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGtt                                                                                                                                        >  1:619300/1‑150 (MQ=255)
               cTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTAATCCCTGCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGtt                                                                                                                                        >  1:522178/1‑150 (MQ=38)
               cTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTGTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGtt                                                                                                                                        >  1:1114978/1‑150 (MQ=255)
                ttCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAACTGTAGGCCGGATAAGGCGttt                                                                                                                                       >  2:782943/1‑150 (MQ=255)
                  cGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGGTTAc                                                                                                                                     >  1:437218/1‑150 (MQ=255)
                        ccAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCA                                                                                                                               <  1:896798‑M2/150‑1 (MQ=255)
                         cAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGTCGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCAT                                                                                                                              <  1:1073964‑M2/150‑1 (MQ=255)
                         cAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCAT                                                                                                                              <  1:935524‑M2/150‑1 (MQ=255)
                              ggAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGC                                                                                                                         <  1:222118‑M2/150‑1 (MQ=255)
                              ggAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCACATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGGTAAGGCGTTTACGCCGCATCCGGC                                                                                                                         <  1:315848‑M2/150‑1 (MQ=255)
                               gAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCa                                                                                                                        >  1:568976/1‑150 (MQ=255)
                                aaaTCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCAt                                                                                                                       >  1:330873/1‑150 (MQ=255)
                                  aTCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGGAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATaa                                                                                                                     <  1:833232/150‑1 (MQ=255)
                                   tCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGgccggatgcggcgtaaacgccttatccgg                                                                                                                          <  2:1064765‑M1/144‑30 (MQ=255)
                                     ggggggtAATAGGAACACCGGGGCCGGATAAGGCTTTTACGACGCATTCGGCAAACAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATaaaaa                                                                                                                  <  2:571357/146‑1 (MQ=21)
                                        tggtAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAg                                                                                                               <  2:144046/150‑1 (MQ=255)
                                        tggtAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAg                                                                                                               >  2:646708/1‑150 (MQ=255)
                                        gggtAATAGCAAAACCTGGGCCGGATAAGGCGTTTAGGCCGCATTCGGCAACCAACGCCTGAGGCGACGCTTGCGCGTCTTATCAGGCCTAGATCGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAg                                                                                                               <  2:480284/149‑1 (MQ=255)
                                          gtAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGt                                                                                                             >  1:299727/1‑150 (MQ=255)
                                              aaGCAAAACCGGGGCCGGAGAAGGCGTTTACGCAGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCCTCTTATCAGGCCTATAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTc                                                                                                         <  2:32758/149‑1 (MQ=25)
                                               aGCAAACCCGGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGAGGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCa                                                                                                        <  2:507540/150‑1 (MQ=255)
                                                gCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGCGTGTCAt                                                                                                       >  2:27214/1‑150 (MQ=255)
                                                   aaaGCTGGGGCGGATAAGGCGTTTACGCGGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTAt                                                                                                    <  2:547195/150‑1 (MQ=255)
                                                         gggCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGaaa                                                                                              <  1:511126/150‑1 (MQ=255)
                                                         gggCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGaaa                                                                                              >  2:1014885/1‑150 (MQ=255)
                                                            ccGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAACCAGGTTGTCATTATCTGAAAggg                                                                                           >  2:855113/1‑150 (MQ=255)
                                                             cGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAATTGTAGGCCGGATAAGGCGCTTACGCCGCATCCGGCATAAAAACGTGTTGTCATTTTCTGTATgggg                                                                                          >  2:806117/1‑150 (MQ=21)
                                                              ggATAAGGCGTTTACGCCGCATTCGGCAACCAACGGCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGc                                                                                         <  2:1086462/150‑1 (MQ=255)
                                                               gATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATaa                                                                                                                                              >  2:246811/1‑96 (MQ=255)
                                                                   aGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAg                                                                                    <  1:20619/150‑1 (MQ=255)
                                                                    ggCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGc                                                                                   >  1:873626/1‑150 (MQ=255)
                                                                      cGTTTACGCCGCATTGGGCAACCAACGCCTGATGCTACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGccc                                                                                 <  2:381821/150‑1 (MQ=255)
                                                                        tttACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCt                                                                                                  >  2:956500/1‑131 (MQ=255)
                                                                           aCGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTg                                                                            >  1:773843/1‑150 (MQ=255)
                                                                            cgccgcATTCGGCAACCAGCGGCTGATGTGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAAGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAACGGGGCGAAAGTCCCTCTGa                                                                           <  2:1001888/150‑1 (MQ=37)
                                                                            cgccgcATTCGGACACCAACGCCTGATGCGAAGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTTGAATGGATGCCGGATCAGGCGTTTAGGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGa                                                                           <  1:280490/150‑1 (MQ=25)
                                                                             gccgcATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAg                                                                                                                                             <  2:166816/83‑1 (MQ=255)
                                                                              ccgcATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGc                                                                                         <  2:1116913/134‑1 (MQ=255)
                                                                              ccgcATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGAtt                                                                         >  2:736022/1‑150 (MQ=255)
                                                                                 cATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGGTTACTCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATc                                                                      <  1:34952/150‑1 (MQ=255)
                                                                                 cATCCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATATGAAAGGGGCGAAAGCCCCTCTGATTATc                                                                      <  2:286658/150‑1 (MQ=255)
                                                                                  atgcGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCg                                                                     <  1:68134/147‑1 (MQ=255)
                                                                                  aTTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGc                                                                                         >  2:1145520/1‑130 (MQ=255)
                                                                                  aTTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCg                                                                     <  2:604584/150‑1 (MQ=255)
                                                                                   ttCGGCAACCACCGCCTTGTGCGATGTGTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCgg                                                                    <  2:631367/150‑1 (MQ=38)
                                                                                   atCGGCAACCAACGCCTGATGAGACGCTGGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCgg                                                                    <  2:1171194/149‑1 (MQ=255)
                                                                                       gCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGttt                                                                >  1:1137714/1‑150 (MQ=255)
                                                                                       gCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCACTGCTTACCAGGttt                                                                >  2:837436/1‑150 (MQ=255)
                                                                                        caaccaacGCCTTATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTa                                                               <  1:383245/150‑1 (MQ=255)
                                                                                        aaaccaacGGCTGATGCGGCGTTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTa                                                               <  2:336645/149‑1 (MQ=255)
                                                                                           ccaacGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGgccggatgcggcgtaaacgccttatccggcctacatttgacagccgttgtaggcctgataa                                                                                          >  1:657835‑M1/1‑59 (MQ=255)
                                                                                            caacGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTCGGCCGGATCAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTGCTCCTTATCTGAAAGGGGCGAAAGCCCCTCTGATTACCGGGTTTAgcgc                                                           >  2:976656/1‑150 (MQ=25)
                                                                                            caacGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTCgcgc                                                           >  2:419994/1‑150 (MQ=255)
                                                                                                 ccTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTAt                                                      <  2:91176/150‑1 (MQ=255)
                                                                                                 ccTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTAt                                                      >  1:1019277/1‑150 (MQ=255)
                                                                                                  cTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGCTAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGGTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTAtt                                                     >  2:940627/1‑150 (MQ=255)
                                                                                                   tGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTg                                                    >  1:166855/1‑150 (MQ=255)
                                                                                                   tGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTg                                                    >  1:469444/1‑150 (MQ=255)
                                                                                                      tGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCt                                                 <  1:977005/150‑1 (MQ=255)
                                                                                                      tGCGACGCTGGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCGATTGCCt                                                 <  2:312223/150‑1 (MQ=255)
                                                                                                        ggACGCTTGCGCGTCTTATCAGGCCTACAACGGCGGTCAAATTGAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTgg                                               <  2:926581/149‑1 (MQ=255)
                                                                                                         gACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAg                                                                                                                                             <  2:526746/55‑1 (MQ=255)
                                                                                                         gACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCAt                                                                                                       <  1:1004792/93‑1 (MQ=255)
                                                                                                         gACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAgc                                                             <  1:1152218/135‑1 (MQ=255)
                                                                                                         gACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGc                                              <  2:691756/150‑1 (MQ=255)
                                                                                                         gACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGc                                              <  1:754777/150‑1 (MQ=255)
                                                                                                            gCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGccc                                                                                 <  1:593923/112‑1 (MQ=255)
                                                                                                              ttGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCCCTGATTATCGGGTTTAGTGCCCTATTGCCTGGCTGCCg                                         >  1:636207/1‑150 (MQ=255)
                                                                                                                  gcgTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGa                                     <  1:1171592/150‑1 (MQ=255)
                                                                                                                   cgTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAg                                    >  1:81098/1‑150 (MQ=255)
                                                                                                                    gTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGtt                                                                 <  1:407181/120‑1 (MQ=255)
                                                                                                                       ttATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTcc                                >  2:36487/1‑150 (MQ=255)
                                                                                                                         aTCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGaaa                                                                                              >  2:185714/1‑86 (MQ=255)
                                                                                                                            aGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGAtt                           >  1:729266/1‑150 (MQ=255)
                                                                                                                              gCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAAc                                                                                                                 <  1:257633/62‑1 (MQ=255)
                                                                                                                                cTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGa                       <  2:403230/150‑1 (MQ=255)
                                                                                                                                cTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGa                       >  2:883085/1‑150 (MQ=255)
                                                                                                                                 tACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAg                      <  1:916866/150‑1 (MQ=255)
                                                                                                                                 cagagcGGCTGGCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTTAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAg                      <  2:716424/145‑1 (MQ=255)
                                                                                                                                   cAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGt                    <  1:705572/150‑1 (MQ=255)
                                                                                                                                   cAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGt                    <  1:36487/150‑1 (MQ=255)
                                                                                                                                   cAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGt                    >  1:152227/1‑150 (MQ=255)
                                                                                                                                           gTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaa            >  2:589468/1‑150 (MQ=255)
                                                                                                                                           gTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaa            <  1:132747/150‑1 (MQ=255)
                                                                                                                                           gTCAAATGTAGGCAGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAtaataa            <  2:677119/150‑1 (MQ=255)
                                                                                                                                           gTCAAAGGTAGGCCGGATAAGGCGGTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaa            <  2:219657/150‑1 (MQ=255)
                                                                                                                                            tCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaat           <  1:794311/150‑1 (MQ=255)
                                                                                                                                            ccAAACGTAGGCCGAATAAGGCGTGTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaat           <  1:23495/149‑1 (MQ=255)
                                                                                                                                               aaTGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaatgaa        >  2:1040574/1‑150 (MQ=255)
                                                                                                                                                 tGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaatgaaaa      >  1:415951/1‑150 (MQ=255)
                                                                                                                                                 tGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaatgaaaa      >  1:955768/1‑150 (MQ=255)
                                                                                                                                                  ggaGGCCGGATAAGGCGTTTACGCCACATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCGCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaatgaaaat     <  2:450177/148‑1 (MQ=255)
                                                                                                                                                  gTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGGTATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACaatgaaaat     <  1:1047387/150‑1 (MQ=255)
                                                                                                                                                     ggCAGGCTAAGCCTTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCACTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGACTTTGCGGTGAAAACaatgaaaatcaa  >  2:203854/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                     
CAGCGACGAGTGGACCTTCGGTGCCCAGATGGAAATCTGGTGGTAATAGCAAAACCTGGGCCGGATAAGGCGTTTACGCCGCATTCGGCAACCAACGCCTGATGCGACGCTTGCGCGTCTTATCAGGCCTACAACGGCTGTCAAATGTAGGCCGGATAAGGCGTTTACGCCGCATCCGGCATAAAAACAGGTTGTCATTATCTGAAAGGGGCGAAAGCCCCTCTGATTATCGGGTTTAGCGCGCTATTGCCTGGCTACCGCTGAGCTCCAGATTTTGAGGTGAAAACAATGAAAATGAA  >  NC_000913_3_hsa_pgi/4249294‑4249592

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.