New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913_3_hsa_pgi	4218558 =	65 (1.220)	10 (0.190) +A	9/268	NT	13.4%	noncoding (123/132 nt)	REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences	REP311 (repetitive extragenic palindromic) element; contains 3 REP sequences
	?	NC_000913_3_hsa_pgi	= 4254047	NA (NA)					noncoding (119/130 nt)	RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site	RIP317 (repetitive extragenic palindromic) element; contains 3 REP sequences and 1 IHF site

CAACCGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTCGAACA  >  NC_000913_3_hsa_pgi/4218421‑4218705                                                                                                                                          |                                                                                                                                                    caacCGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGATGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCaa                                                                                                                                          <  2:345344/149‑1 (MQ=255)   acCGTTGCTGACTGTAGGCCGGATAAGGCGTTCCCGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAAtt                                                                                                                                        <  1:61342/149‑1 (MQ=255)     cGTTGCTGACTGTAGGCCGGATAATGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATtct                                                                                                                                      <  1:268965/149‑1 (MQ=255)     cGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCTATCAGAGCAGGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATtct                                                                                                                                      <  1:29033/149‑1 (MQ=255)     cGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATtct                                                                                                                                      <  1:559605/149‑1 (MQ=255)      cttttgtaCTATAGGCCGCATAAGTCTTTCACGCAGCATCCGGCAATCGGTGCACGATGGCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATtctc                                                                                                                                     <  2:397540/142‑1 (MQ=21)            gACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCAGCATCCGGCAATTCTCTGCTcc                                                                                                                               >  1:959777/1‑149 (MQ=255)               tGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACGGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCtga                                                                                                                            >  1:893977/1‑149 (MQ=255)               tGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGCTAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCtga                                                                                                                            >  1:4769/1‑149 (MQ=255)                aagccggatgatcatccggctttcttctgggttgcctgatgcgcggcgcttctcaggcctacacaacacatcgcaatttatcgaatttgcagattatggaaggccggataaggcgttttcgtCGCATCCGGCAATTCTCTGCCcctgct                                                                                                                           <  2:24847‑M1/27‑3 (MQ=255)                    gCCGTATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGACTGATGCGACGCTTGCTCGTCTTATCATGCCTACAGCCGTTGCCGCACGTAGACTGGATAAGGCTTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAgg                                                                                                                       <  1:849874/149‑1 (MQ=25)                    gCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCtgatgacg                                                                                                                       >  1:665996/1‑147 (MQ=255)                    gCCGGATAAGGCGTTCACGCCGCATCAGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGAGTCTTATCATGCCTACAGCCGTTGCCGACCGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTCCTCCTGATGAgg                                                                                                                       >  2:289626/1‑149 (MQ=255)                      tggATAAGGCGTTCACGCTGCCTCCGGCAATCGGTACACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGgc                                                                                                                     <  1:5000/148‑1 (MQ=255)                      cGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGgc                                                                                                                     >  1:823861/1‑149 (MQ=255)                        gATAAGGCGGTCACGCCGCATCCGGCAATCGGTGCACGATGCTTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGgcgc                                                                                                                   <  2:615727/149‑1 (MQ=255)                           tcatccggctttcttctggattgcctgatgcgcggcgcttctcaggcctacacaacacatggcaatttattgaatttgcagattatgaaatgccgtataaggcgttttaGCCGCATCCGCCAATTCTCTGTTCATGATGAGGGCGCtat                                                                                                                <  2:501187‑M1/40‑2 (MQ=255)                           aaGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTaa                                                                                                                >  2:80957/1‑149 (MQ=255)                             ggCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTAATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTGAAt                                                                                                              >  2:261599/1‑149 (MQ=255)                                    aCGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATACGGCAATTCTCTGCTCCTGTTGAGGGCGCTCAATGCCGCGt                                                                                                       >  2:680356/1‑149 (MQ=255)                                        ttctgggttgcctgatgcgcggcgcttctcaggcctatacaacacatcgcaatttattgaatttgcagattatggaaggccggataaggcgttttcgtCGCTTCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGcc                                                                                                   >  2:634208‑M1/99‑149 (MQ=255)                                        ttctgggttgcctgatgcgcggcgcttctcaggcctacacaacacatcgcaatttattgaatttgcagattatggaaggccggataaggcgttttaGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGcc                                                                                                   <  1:90538‑M1/53‑1 (MQ=255)                                        cgcATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGcc                                                                                                   <  1:397805/149‑1 (MQ=255)                                           aTCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCAGATGAGGGCGCTAAATGCCGCGTGGCCTgg                                                                                                >  1:255401/1‑149 (MQ=255)                                             ggttgcctgatgcgcggcgctcctcaggcctacacaacacatcgcaatttattgaatttgcagtttatggaaggtcggataaggcgttttcgtCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGaa                                                                                              >  1:252161‑M1/94‑149 (MQ=255)                                               ggCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACGGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAAATCTCTGCTCCTGACGAGGGCGCTAAATACCGCGTGGCATAGAatc                                                                                            >  2:192416/1‑148 (MQ=37)                                               ggCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCTGCGTGGCCTGGAatt                                                                                            >  1:712549/1‑149 (MQ=255)                                                 cAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGAATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAattat                                                                                          >  1:598550/1‑149 (MQ=255)                                                  cctgatgcgcggcgcttctcaggcctacacaacacatcgcaatttattgaatttgcagattatgtaaggccggataaggcgttttaGCCGCATCCGGCGATTCTATGATCCTGATGAGGTCGCTACATGCCGAGTGGCATGGAattatt                                                                                         <  2:628599‑M1/63‑1 (MQ=255)                                                    tCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTattga                                                                                       <  2:305868/149‑1 (MQ=255)                                                    tCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTattga                                                                                       <  1:817879/149‑1 (MQ=255)                                                        tGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGc                                                                                   >  2:997554/1‑149 (MQ=255)                                                          gcggcgcttctcaggcctacacaacacatcgcaatttattgaatttgcagattatggaaggccggataaggcgtttttttTTTTTTTTGCAATTCTCTGCTCCTGATGAGGGCGCTCAATGCCGCGTGGCCTGGAATTCTTGATTGCTc                                                                                 <  2:236251‑M1/69‑1 (MQ=255)                                                           cggcgctttttaggcctacacaacacatcgcaatgtattgaatttgcagattatggaaggctggataaggcgttttCGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCa                                                                                >  2:763349‑M1/77‑149 (MQ=255)                                                           aCGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCa                                                                                <  1:80957/149‑1 (MQ=255)                                                             gcgcttctcaggcctacacaacacatcgtaatttattgaattttcatattatggaaggccggataaggcgttttcgtCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCaaa                                                                              >  1:601458‑M1/78‑149 (MQ=255)                                                             gcgcttctcaggcctacacaacacatcgcaatttattgaatttgcagattatggaagtctggataaggcgttttCGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCaaa                                                                              <  1:948790‑M1/75‑1 (MQ=255)                                                             gcgcttctcaggcctacacaacacatcgcaatttattgaatttgcagattatggaaggccggagaaggcgttttaGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCaaa                                                                              >  1:893546‑M1/76‑149 (MQ=255)                                                               tGCCTGATGCGGCGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGGTAAGGCGGTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAAcc                                                                            >  2:541848/1‑149 (MQ=255)                                                                 ccTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCCTGGCCTGGAATTATTGATTGCTCAAACCAt                                                                          >  2:787399/1‑149 (MQ=255)                                                                  cTGATGCTACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCAtt                                                                         <  1:527522/149‑1 (MQ=255)                                                                   ctcaggcctacacaacacatcgcaatttattgaatttgcagattatggaaggccggataaggcgttttaGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGGTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAACACAttt                                                                        <  2:47210‑M1/80‑1 (MQ=255)                                                                    tcaggcctacacaacacatcgcaatttattgaatttgcagattatggaaggccggataaggcgttttaGCCGCATCCGGCAATTCTCTCCTCCTGATGACGGCACTACATGCCGCCTGGCCTGGAATAATTACTTGCTAGAACCAtttt                                                                       <  2:731821‑M1/81‑1 (MQ=255)                                                                       gCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTgg                                                                                                     <  1:486730/116‑1 (MQ=255)                                                                       gCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTgg                                                                                                     >  2:486730/1‑116 (MQ=255)                                                                         gACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAg                                                                  >  1:595462/1‑149 (MQ=255)                                                                          aCGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCACGTCGCCTGGAATCATTGATTGCTCAAACCATTTTGCAAga                                                                 >  1:377458/1‑148 (MQ=255)                                                                                aacacatggcaatttattgaattttcagattatggaaggccggataaggttttttcgtCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGa                                                           >  1:126763‑M1/59‑149 (MQ=255)                                                                                 cgcgTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCACGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGag                                                          >  1:323228/1‑148 (MQ=255)                                                                                  gcgTCTTATCATGCCTACAGGCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCCGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATg                                                         <  2:354647/149‑1 (MQ=255)                                                                                   cgTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGACAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTg                                                                                                 >  2:940867/1‑108 (MQ=255)                                                                                   cgTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGACAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTg                                                                                                 <  1:940867/108‑1 (MQ=255)                                                                                     tCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAatt                                                                                            <  1:544201/111‑1 (MQ=255)                                                                                     tCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAatt                                                                                            >  2:544201/1‑111 (MQ=255)                                                                                        tATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTattgat                                                                                      >  1:806181/1‑114 (MQ=255)                                                                                        tATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTattgat                                                                                      <  2:806181/114‑1 (MQ=255)                                                                                         caatttattgtatttgcagattatggaaggctggttaaggcgttttCGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTa                                                  >  1:362620‑M1/47‑149 (MQ=255)                                                                                         aTCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCt                                                                                  <  2:979501/117‑1 (MQ=255)                                                                                         aTCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAAc                                                                             <  2:624030/122‑1 (MQ=255)                                                                                         aTCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAAc                                                                             >  1:624030/1‑122 (MQ=255)                                                                                         aTCATGCCTAAAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCt                                                                                  >  1:979501/1‑117 (MQ=255)                                                                                            aTGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATgg                                               >  1:772000/1‑149 (MQ=255)                                                                                            aTGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATgg                                               >  1:463536/1‑149 (MQ=255)                                                                                            aTGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGCCTTCGATGCTCAGTATgg                                               >  1:308197/1‑149 (MQ=255)                                                                                             tGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTTGCCTGGAATTATTGATTGCTAAAACCATTTTGGAGGGCTTCGAGGATCAGTATGGt                                              >  1:477341/1‑149 (MQ=39)                                                                                              gCCTACAGCCGTTGTCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTc                                             <  2:98179/149‑1 (MQ=255)                                                                                                gtgaatttggagattattgaaggccggataaggcggtttcgtCGCATCCGGCTATTCTCTGCTCCTGATGAGGGAGCTAAATGTCGCGTGGCCTGGAATTATTGCTTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGa                                           >  2:308067‑M1/43‑149 (MQ=255)                                                                                                gtgaatttggagattatggaaggccggataaggcgttttggtCGCATCCGGGAATTCTCTGCTCCTGATGAGGGCGCTACATGCCGGGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGa                                           >  2:445670‑M1/43‑149 (MQ=255)                                                                                                     tttgcagattatgaaaggcttgataaggcgatttCGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCt                                      >  1:153076‑M1/35‑149 (MQ=255)                                                                                                      ttgcagattatggacggctggataaggcgcttgCGCCGCACCCGGCAATTCTCTGCTCCTGATGAGGGCTCTAAATGCCGCTTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTc                                     >  2:531166‑M1/34‑149 (MQ=255)                                                                                                      ttgcagattatggaaggctggataaggcgttttCGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTc                                     >  1:346582‑M1/34‑149 (MQ=255)                                                                                                      ttgaagattatggaaggacggaaaaggcgttttcgtCGCATCCGGCAATTCTCTGCTCCTGATGAGGGAGCTAAATGCCGCGTGGTCTGGAATTATTGATCGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTc                                     >  1:883423‑M1/37‑149 (MQ=255)                                                                                                         ttGCCGAACGTAGGCTGCATAAGGTGGTTACGCCGCAGCCGGCAATTCTCTGCTCCTGATGAGGGCGCTATATGCCGCGTGGCCTGGAATTATCGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCATTATGGTCGATGCCTCGaa                                  <  1:928242/149‑1 (MQ=255)                                                                                                             cGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTAAGGTCGATTCCTCGAAGTGa                              >  1:12241/1‑149 (MQ=255)                                                                                                             cGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTATCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGCAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGtac                              >  2:519985/1‑147 (MQ=255)                                                                                                             cGAACGTAGGCTGGATAAGGCGTTGACGCCGCATGCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAGGGCTTCGAGGCTCAGTATGGTCGATTCCTCGAAGTGa                              <  2:701969/149‑1 (MQ=255)                                                                                                              tatgggaggccggataaggcgttttcgtCGCATCCGGCAATTCTCTGCTTCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGAc                             >  2:355243‑M1/29‑149 (MQ=255)                                                                                                                  gTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGCTAAGCGCGCTAAATGCCGCGTAGCCTAGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCTATGCTCAGTATGGTCGATTCCTCGAAGTGACCTcc                         >  1:141648/1‑149 (MQ=39)                                                                                                                   aatgccggATAAGGCGTTTTCGCCGCATTCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCg                        <  1:549633/143‑1 (MQ=255)                                                                                                                     ggCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGt                      >  1:837335/1‑149 (MQ=255)                                                                                                                       cTGGATAAGGCGTTTACGCCACCACCTTCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTgc                    <  2:959777/149‑1 (MQ=255)                                                                                                                        tGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAg                                                    <  2:263559/116‑1 (MQ=255)                                                                                                                        tGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAg                                                    >  1:263559/1‑116 (MQ=255)                                                                                                                             aaGGCGTGTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCgcagca              <  1:681897/149‑1 (MQ=255)                                                                                                                                gCGTTTACGCCGCCTCCAGCAAGTTTCTGCTCCTGATGCGGGGACGAAATCCCGAGTGGGATGTACTGCTGGAATACACAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCATCGAAGTGACCGCCGGTGCGCAGCACCg           >  2:966103/1‑149 (MQ=255)                                                                                                                                  gcttACGCCTCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTACATGCCGCGTGGCCTGGAATTATTTATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGtt         <  2:549093/147‑1 (MQ=255)                                                                                                                                  gTTTGCGGCGAACCCGGCAATGCTCTGCTGCTGATGAGGTCGCCAAAGGCGTGGTTGCCTGGTATTTTTGATTGCTCAAACCATTTTGCAAGTCTTCGGTGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGtt         <  2:193660/149‑1 (MQ=255)                                                                                                                                   ttgtcgccgtAGCCGGCAATTCTCGGCTCCTGATGAGGGCGCTAAATGCCGCGGGGCCTGGAATGATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGGTCAGAGTGGGCGATTCCTCGAAGTGAGCGCCGGTGCGCAGCAGCGtgt        <  2:170765/145‑3 (MQ=255)                                                                                                                                   gtttcgacgcAGCCGGCTATTCTTTGCTCCTGGTGATGGCGATAAATGCAGCGTGGCCGTGAATTATTGATTGCTTAAATCTTTTTGCAAGGCTTAGATGCTCAGTATGGTCGATTCCTCGTGGTGTCCTCCGGTGCGCAGCAGCGttt        <  2:286252/142‑1 (MQ=255)                                                                                                                                    tttcgtCTCATCTGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTc       >  1:368640‑M1/7‑149 (MQ=255)                                                                                                                                    ttccgccgcATCCGGCTATTCTTTCCTCCTGATGAGGGCGCTAAATGCCGCGTGGCATGGAGCTATTGACTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTc       <  1:233535/146‑1 (MQ=255)                                                                                                                                      gcggcgcATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCGGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTCGa     <  2:248708/145‑1 (MQ=255)                                                                                                                                       ggtCGCATCCGGCAATTCTCTGCGCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCAGTTTGCAAGGCTTCGATGCTCAGTATGGTTGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTCGaa    >  2:838013‑M1/4‑149 (MQ=255)                                                                                                                                       cgtCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTCGaa    >  1:596761‑M1/4‑149 (MQ=255)                                                                                                                                       cggcgcATCTGGCAATTCCCTGCTCCTGAGGAGGGCGGTAAATGCCGCGTGGCCCGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACTTCCGGTGCGTAACAGCGTTTCGaa    <  2:371014/146‑1 (MQ=255)                                                                                                                                        gtCGTATCCTGCAATTCTCTGCTCCTGATGAGGGCGCTTAATGCCGCGTGGCCTGGAATTATTTATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTCGAAc   >  2:351746‑M1/3‑149 (MQ=255)                                                                                                                                        gtCGCATTCGGCAATTCTCTTCTCCTGATGAGGGCGCGAAATGCCGCGTGGCCTGGAATTATTGATTGCTTAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTCGAAc   >  1:464522‑M1/3‑149 (MQ=255)                                                                                                                                         ccgcATCCGGCACTTCTCTGCTCCTGATGAGGGCCCTCAATGCCGCGTGGCCTGCAATTATTGATTGCTCAAACAATTTTGCAAGGCTTCGATGCTCAGTATGGACGCTTCCTCGACCTGACATACCAACCGCAGCCGCGTTTCTAACa  >  2:959714/1‑149 (MQ=255)                                                                                                                                          |                                                                                                                                                    CAACCGTTGCTGACTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAATCGGTGCACGATGCCTGATGCGACGCTTGCGCGTCTTATCATGCCTACAGCCGTTGCCGAACGTAGGCTGGATAAGGCGTTTACGCCGCATCCGGCAATTCTCTGCTCCTGATGAGGGCGCTAAATGCCGCGTGGCCTGGAATTATTGATTGCTCAAACCATTTTGCAAGGCTTCGATGCTCAGTATGGTCGATTCCTCGAAGTGACCTCCGGTGCGCAGCAGCGTTTCGAACA  >  NC_000913_3_hsa_pgi/4218421‑4218705

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.