New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NC_000913_3_hsa_pgi = 4245215NA (NA)3 (0.060) 3/258 NT NA noncoding (96/126 nt) REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences
?NC_000913_3_hsa_pgi = 4245245 NA (NA)noncoding (126/126 nt) REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences REP315 (repetitive extragenic palindromic) element; contains 3 REP sequences

Only 100 of 1319 total aligned reads displayed.

CGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTACGCACGGCATACCAGAAAGCGGACA  >  NC_000913_3_hsa_pgi/4245067‑4245363
                                                                                                                                                    |                                                                                                                                                    
   tttGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGgcc                                                                                                                                                   >  1:544085‑M1/1‑146 (MQ=255)
   tttGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGgcc                                                                                                                                                   >  1:777382‑M1/1‑146 (MQ=255)
    ttGCCACGAATGTTTCTTTTTAATGACATCCATGGGGTTTTTGCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAAGAATTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGgccg                                                                                                                                                  <  2:450382‑M1/149‑5 (MQ=255)
       ccacaaATGTTTCTTTTTAATTACAGCCATGGTGTTCTTCCTCAGTCCAGGACGTATAAGGCTTCCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGAc                                                                                                                                               <  2:810315/149‑1 (MQ=38)
         accaATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACaa                                                                                                                                             >  1:49811/1‑149 (MQ=255)
         acaaaTGTTTCTTTTTAATGACATCCATGGAATTATTCCTCATTCCAGGAAAGATAAAGCTTTCACGCCTTATCCGACAACAACTGCCTGATACGACGCTGACGCGTCTTATAAGGCCTACATACGTTTCGGTTGTTCAGGCCGAACaa                                                                                                                                             >  2:474830/4‑149 (MQ=255)
               gTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGtt                                                                                                                                       >  2:14999/1‑149 (MQ=255)
                 ttCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTGTGATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGGCAAGGCGTTCa                                                                                                                                     >  1:579620/1‑149 (MQ=255)
                   cTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCAcg                                                                                                                                   >  2:956805/1‑149 (MQ=255)
                    tttttAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGACGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCAcgc                                                                                                                                  <  1:755835/149‑1 (MQ=255)
                     ttttAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCAcgcc                                                                                                                                 >  1:621747/1‑149 (MQ=255)
                     ttttAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCAcgcc                                                                                                                                 >  2:522417/1‑149 (MQ=255)
                         aaTGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCAT                                                                                                                             <  1:825570‑M2/149‑1 (MQ=255)
                           tGACATCCATGGGGTTCTTCCTCATTCCAGGAAGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATCCAACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTGTGGTAGACCGGACAAGCCGTTACCGCCGCATac                                                                                                                           <  1:256867‑M2/149‑3 (MQ=255)
                            gACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGATAAGGCGTTTACGCCGCATCCG                                                                                                                          >  2:755347‑M2/1‑149 (MQ=255)
                            gACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCG                                                                                                                          >  1:73267‑M2/1‑149 (MQ=255)
                             aCATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGCCAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTCTTGTAGGCCGGACACGGCGTTCACACCGCATCCGa                                                                                                                         <  2:843479‑M2/149‑2 (MQ=255)
                               aTCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGTCAAGGCGTTCACGCCGCATCCGGCa                                                                                                                       >  1:908980/1‑149 (MQ=255)
                               aTCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGCCAAGGCGTTCACGCCGCATCCGGCa                                                                                                                       >  2:197920/1‑149 (MQ=255)
                                tCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCAt                                                                                                                      <  1:384204/149‑1 (MQ=255)
                                  cATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCAttt                                                                                                                    >  2:402871/1‑149 (MQ=255)
                                  cATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCAttt                                                                                                                    >  2:134200/1‑149 (MQ=255)
                                    tGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCctttca                                                                                                                  <  2:89769‑M2/149‑7 (MQ=255)
                                      tggTTCTTCCTCATTCTAGGACGGATAAGGCTTTCACTTCTTATCCGACAACAACTGCTTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTcaca                                                                                                                <  1:331876/148‑1 (MQ=255)
                                      gggTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTcaca                                                                                                                <  2:111936/149‑1 (MQ=255)
                                       ggTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATGCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAg                                                                                                               >  2:670511/1‑149 (MQ=255)
                                        gTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAATGCGGTCACGCCGCATCCGGCATTTcaaaca                                                                                                              >  1:462819/1‑145 (MQ=255)
                                         ttcttcCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCa                                                                                                             <  1:510066/149‑1 (MQ=255)
                                            ttcCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAATAACTGTCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTa                                                                                                          <  1:280058/149‑1 (MQ=255)
                                            ttcCCCCTTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAAAAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCAGGACAAGGCCTTCACGCCGCATCCGGACTTTCACAGccata                                                                                                          >  2:329669/1‑145 (MQ=37)
                                               cTCATTCCAGGACGGATAAGGCTTTCCCGCCTTATCCCACAACAACTGCCTCATGCGACGCTGACGCGTCTTATCAGACCTACATACGTCTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTCCtt                                                                                                       >  2:692170/1‑149 (MQ=38)
                                               cTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACtt                                                                                                       >  1:675410/1‑149 (MQ=255)
                                               cTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTAGAGGTGAAAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACtt                                                                                                       >  1:231430/1‑149 (MQ=38)
                                                 cATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTgg                                                                                                     <  2:864652/149‑1 (MQ=255)
                                                 cATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTgg                                                                                                     <  1:314800/149‑1 (MQ=255)
                                                  cttCCAGGACGGATCAGGCTTTCACGACTCTTCCGACAACAAACGCTTGCCGCGCTGCTGCCGCGTATAAAGCGTCGTACCTCCGTCCCTTGTGTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGt                                                                                                    <  1:740268/148‑1 (MQ=12)
                                                  aTTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGt                                                                                                    <  1:195988/149‑1 (MQ=255)
                                                   ttCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGc                                                                                                                                          <  2:30989/110‑1 (MQ=255)
                                                      cAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGAATAACTTGGTGATa                                                                                                >  1:418934/1‑149 (MQ=255)
                                                       aGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATAc                                                                                               >  1:528423/1‑149 (MQ=255)
                                                         gACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGa                                                                                             >  2:569035/1‑149 (MQ=255)
                                                                aaGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGTTACAAGTCTgcc                                                                                      >  1:166952/1‑148 (MQ=255)
                                                                 aGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAAGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTCCTTTGTGATACGAGTCTgcgc                                                                                     >  2:976090/1‑149 (MQ=255)
                                                                  ggCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTTATACGAGTCGGcgcg                                                                                    >  2:348247/1‑149 (MQ=255)
                                                                   gCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGGCAGGTCGTATCAGGGATACATACGTTTCGGTTATGTAGTCCGGACAAGGCGTTCACACCGCATCCGGCATTTCACAGCATTACTTATTGCTACTAGTCTGCGCGt                                                                                   >  2:508752/1‑149 (MQ=255)
                                                                     tttCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTCCATACGATTCGGTTTTGTAGGCCGGCCAAGGCGTTCACACCGCCTCCGGCATTTCCCAGCATTGCTTGGTGGTTCGCGTCCgcctctcc                                                                                 >  2:627806/1‑143 (MQ=37)
                                                                         aCGCCTTATCCGACAACAACTGCCTGATTCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCa                                                                             <  1:877422/149‑1 (MQ=255)
                                                                         aCGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGGTTCGGTTTTGGAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTcc                                                                             >  2:588306/1‑148 (MQ=255)
                                                                          cGCCTTATTCGACAACAATGGCCTGATGCGACGCTGACGCGTTTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAg                                                                            <  1:184521/149‑1 (MQ=255)
                                                                           gCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTAACTACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAgg                                                                           >  1:144344/1‑149 (MQ=255)
                                                                            ccTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGt                                                                                                    >  1:68846/1‑123 (MQ=255)
                                                                                  ccggtgacaacTGCCTGAGGCGATGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGTATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCAt                                                                    <  2:740458/143‑1 (MQ=38)
                                                                                   cGACAACAACTGCCTGATGCGAGGCTGACGCGTCTTATCAGGCCTACATACGTTTGGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTATTTCAGGGGTTAAtt                                                                   >  2:938163/1‑148 (MQ=38)
                                                                                   cGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGTTGCTACGAAGCTGCGCGTCTTTCAGGGCGTGATc                                                                   >  1:99009/1‑149 (MQ=37)
                                                                                     acaacaCCTGCCTGACGCGCACCTGACTCTTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCCGCATTTCACAGAATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGa                                                                 <  1:480606/149‑1 (MQ=255)
                                                                                     acaacaACTGCCTGATGCGACGCTGACGCTTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGa                                                                 <  1:349273/149‑1 (MQ=255)
                                                                                     acaacaACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGCCTTTGAAAGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGa                                                                 >  1:646020/1‑149 (MQ=255)
                                                                                      caacaaCTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGAc                                                                <  1:955668/149‑1 (MQ=255)
                                                                                       aacaacTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACa                                                               <  1:108686/149‑1 (MQ=255)
                                                                                        acaacTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAg                                                                                                               >  1:808324/1‑100 (MQ=255)
                                                                                         caccTGCCTGATGCGACGCTGACGCGTCTTATCCGGCCTAAATACGACTCGGATTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGt                                                             >  1:404008/4‑149 (MQ=38)
                                                                                         caacTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGt                                                             >  2:368812/1‑149 (MQ=255)
                                                                                           acTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGa                                                                                             >  1:940788/1‑115 (MQ=255)
                                                                                             tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTga                                                         <  2:1843/149‑1 (MQ=255)
                                                                                             tGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTga                                                         <  1:971423/149‑1 (MQ=255)
                                                                                              gCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTgac                                                        <  1:43864/149‑1 (MQ=255)
                                                                                              gCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTgac                                                        <  1:300001/149‑1 (MQ=255)
                                                                                                cTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTgacga                                                      >  2:548673/1‑149 (MQ=255)
                                                                                                 tGATGCGCCGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTgacgac                                                     <  2:497243/149‑1 (MQ=255)
                                                                                                  caggCGACGCTGACGCGCCTTATCAGGCCTACATCCGTTTCGGTTTTGTAGGCCGGATAAGGCGTTGACGCCGCATCCTGCATTTCACATCATTACTTGGTGATACGAGTCTGTGCGTCTTTCAGGGTTTCATCGACAGTCTGACGAcc                                                    <  2:100246/146‑1 (MQ=38)
                                                                                                      cggcgttGATGCGTCTTTTCAGGCCTACTTACTTTTTGTTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACCGCATTACTTGGTGATACGTGTCTGCGGGTCTTTCATGGCTTCATCGACAGTCTGACGACCGCTg                                                <  1:859381/143‑1 (MQ=37)
                                                                                                       gACGCTGATGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTATGACGACCgaggt                                               >  1:705093/1‑145 (MQ=255)
                                                                                                       gACGCTGACGCGTCTTATCAGGCCTACATACGCTTCGGGTTTGTAGGCGGTACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCCTCTTTACGGGCTTCATCGACAGTCTGACGACCGCTgg                                               >  2:419581/1‑149 (MQ=39)
                                                                                                         cGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTg                                                <  1:127295/146‑1 (MQ=255)
                                                                                                            tGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGgcggcg                                          >  1:560440/1‑149 (MQ=255)
                                                                                                             gaggcgcCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGt                                         <  2:713065/146‑1 (MQ=255)
                                                                                                                gcgTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTcac                                                                                                                 >  2:166906/1‑74 (MQ=255)
                                                                                                                gcgTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGa                                      >  2:6502/1‑149 (MQ=255)
                                                                                                                gcgTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCAAGCCGCATCCGGGATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACCCTCTGCCGCCCGCTGGCGGCGCTGa                                      >  2:856708/1‑149 (MQ=39)
                                                                                                                   tCTTATCTGGCCTATTTACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGTATTTCACTGCATTACTTGGTGATACGAGGCTGCGTGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCa                                   <  1:896807/149‑1 (MQ=39)
                                                                                                                   tCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTc                                                                              <  2:441191/106‑1 (MQ=255)
                                                                                                                     ttATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCAcc                                 >  2:918074/1‑149 (MQ=255)
                                                                                                                        tCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCa                              <  2:613628/149‑1 (MQ=255)
                                                                                                                         cAGGCCGACATACGTTTCAGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGACACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAg                             <  2:292809/149‑1 (MQ=255)
                                                                                                                            gCCTACATACGTTTCGGTTTTGTAGGCCGGACAGGACGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGCCAGTCTGACCACCGCTGGCGGCGTTGATCACCGCCGtcc                          >  2:216224/1‑147 (MQ=255)
                                                                                                                            gCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGGTCACCGCAGTAc                          >  1:451542/1‑149 (MQ=255)
                                                                                                                            gCCTACATACGTTTCGGGTTTATAGGCCAGACAAGGCGTTCACGACCCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGTCGTTGATCACCGCAGTAc                          >  2:382486/1‑149 (MQ=255)
                                                                                                                                aCATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTACGCAc                      <  2:245848/149‑1 (MQ=255)
                                                                                                                                 cATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGt                                         <  1:795390/129‑1 (MQ=255)
                                                                                                                                 cATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTACGCACg                     <  2:883854/149‑1 (MQ=255)
                                                                                                                                  aTACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTACGCACgg                    <  2:775307/149‑1 (MQ=255)
                                                                                                                                  aTACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTACGCACgg                    <  1:215146/149‑1 (MQ=255)
                                                                                                                                      gTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTACGCCCGGCATa                >  1:84043/1‑149 (MQ=255)
                                                                                                                                      gTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTACGCACGGCATa                >  1:1000352/1‑149 (MQ=255)
                                                                                                                                          cGGGTTTGTAGGCCGGACAAGGGGTTCACGTCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTACGCACGGCATACCAg            <  2:790430/149‑1 (MQ=255)
                                                                                                                                            gTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTACGCACGGCATACCAGaa          >  1:612578/1‑149 (MQ=255)
                                                                                                                                                tgtgGGGCGGACCTGGCGTTGACGCCGCATCGGGCATTTCAGAGCATTACTTGGGGATACGAGTCGGGGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTACGCACGGCATACCAGAGAGCg      <  2:270656/149‑1 (MQ=255)
                                                                                                                                                  tAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTACGCACGGCATACCAGAAAGCGGa    <  1:368812/149‑1 (MQ=255)
                                                                                                                                                    ggCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTACGCACGGCATACCAGAAAGCGGACa  >  1:600226/1‑149 (MQ=255)
                                                                                                                                                    ggCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTACGCACGGCATACCAAAACGCGGACa  >  2:83098/1‑149 (MQ=255)
                                                                                                                                                    |                                                                                                                                                    
CGCTTTGCCACCAATGTTTCTTTTTAATGACATCCATGGGGTTCTTCCTCATTCCAGGACGGATAAGGCTTTCACGCCTTATCCGACAACAACTGCCTGATGCGACGCTGACGCGTCTTATCAGGCCTACATACGTTTCGGTTTTGTAGGCCGGACAAGGCGTTCACGCCGCATCCGGCATTTCACAGCATTACTTGGTGATACGAGTCTGCGCGTCTTTCAGGGCTTCATCGACAGTCTGACGACCGCTGGCGGCGTTGATCACCGCAGTACGCACGGCATACCAGAAAGCGGACA  >  NC_000913_3_hsa_pgi/4245067‑4245363

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.